Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Reverse (-)

15103258 .. 15108938

Gene Structure 5681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGGGTGTGGGTGTTCGAAGCTCTATGCGTGTTGTGGAGGTCCAGAAGATAATGTACCAGTTCCTGAGCCCCAGACTGTGGAAAATGAGGAAGGAAATGAACTTGATTTGCCTGCATTTCATGAATACACAATTGAGCAACTTAGGACAGCGACATCAGGGTTTGCTGTTGAGAATATAGTTTCTGAACATGGGGAGAAAGCCCCTAATGTTGTTTACAAGGGGAAGCTTGACAATCAAAGAAGGATTGCTGTCAAAAGATTCAATAGATCTGCTTGGCCCGATTCTCGTCAATTTTTGGAAGAAGCAAGGTCTGTGGGGCAGCTCCGCAACATCCGATTAGCAAATTTACTTGGCTGTTGTTGCGAAGGTGATGAGAGGTTACTTGTTGCTGAATATATGCCCAACGATACATTGGCAAAGCATTTATTTCATTGGGAAACCCAACCCATGAAGTGGGCAATGCGGTTACGGGTGGCTTTATATCTTGCACAGGCTCTTGAATATTGTACCAGTAGAGGACGTGCCCTTTATCACGATTTGAATGCTTATAGAATAGTTTTTGATGATGAGGGAAACCCTAGACTTTCATGCTTTGGTATGATGAAAAACAGTAGAGATGGGAAAAGCTACAGCACAAATCTGGCATTTACTCCTCCCGAGTATCTAAGGACAGGGAGAGTAACTGCGGAAAGTGTAATGTATAGCTTTGGCACCCTCTTGCTTGACCTTCTCAGTGGAAAACATATTCCTCCAAGCCATGCACTCGACCTTATTCGGGACAGGAATCTTCAGATGTTAACAGATTCTTGTTTGGAAGGCCAATTTACAAATGATGAGGGAACTGAGTTAAAGGACACTGAGGTTCCTTCTCATGTATTGATGGGTATACCACATGGTGCAGCAGCTTTACCTAGTCTATCACCACTTGGTGAAGCTTGTGTGAGGATGGATTTGACGGCCATCCATGAGATCTTAGAAAGTATTGGATATAAGGATGATGAAGGAACAGCGACTGAGCTTTCATTCCAGATGTGGACCAACCAAATGCAGGACACGTTGAACTCAAAGAAAAAGGGTGATGTTTCTTTCCGTCATAAAGATTTCAGAGCTGCAATTGATTGCTTCACTCAGTTTATTGATGTTGGAACCATGGTTTCTCCGACAGTTTATGCACGCCGTAGTTTGTCTTATCTCATGAGTGAAATGCCACAGGAAGCCTTGAATGATGCGTCACAAGCCCAAGTGATTTCCCCTATTTGGCACATTGCATCCTATTTGCAAGCTGCAGCTCTTTTTTCACTTGGAAGGGATGATGAGGCACAAGTAGCCCTCAGAGAGGGTTCTGTACTTGAAACTAAAAGGAATGCAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

459

Amino Acids

51.33

Weight (kDa)

5.28

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 250	6e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	71 - 256	4.3e-18	Protein kinase domain
TPR_BSK1_C	PF25575	312 - 429	2.9e-62	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	713
AccB7I	CCANNNNNTGG	2 cut(s)	79, 456
AccI	GTMKAC	1 cut(s)	889
AciI	CCGC	3 cut(s)	328, 466, 689
AcoI	YGGCCR	1 cut(s)	960
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	776
AdeI	CACNNNGTG	2 cut(s)	899, 932
AfaI	GTAC	3 cut(s)	57, 511, 1350
AfiI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1051, 1260, 1339
AflIII	ACRYGT	1 cut(s)	1056
AgsI	TTSAA	6 cut(s)	265, 503, 544, 1063, 1225, 1355
AjiI	CACGTC	1 cut(s)	524
AlwNI	CAGNNNCTG	2 cut(s)	65, 1016
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	3 cut(s)	278, 820, 960
ApeKI	GCWGC	6 cut(s)	322, 902, 905, 1112, 1286, 1289
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	41, 279, 1038
AsuHPI	GGTGA	4 cut(s)	383, 915, 944, 1091
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	41, 1038
BaeGI	GKGCMC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbvI	GCAGC	6 cut(s)	334, 914, 917, 1099, 1273, 1301
BccI	CCATC	4 cut(s)	614, 877, 943, 971
BceAI	ACGGC	2 cut(s)	975, 1164
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BfaI	CTAG	2 cut(s)	582, 915
BfmI	CTRYAG	2 cut(s)	631, 1287
BglII	AGATCT	2 cut(s)	269, 972
BisI	GCNGC	6 cut(s)	323, 903, 906, 1113, 1287, 1290
BlsI	GCNGC	6 cut(s)	324, 904, 907, 1114, 1288, 1291
Bme18I	GGWCC	2 cut(s)	41, 1038
BmeT110I	CYCGRG	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	3 cut(s)	41, 279, 1038
BmiI	GGNNCC	3 cut(s)	715, 867, 1150
BmsI	GCATC	2 cut(s)	1219, 1280
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	1152
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1051, 1260, 1339
Bse1I	ACTGG	2 cut(s)	59, 513
Bse3DI	GCAATG	2 cut(s)	468, 1266
BseDI	CCNNGG	1 cut(s)	1152
BseGI	GGATG	6 cut(s)	333, 954, 963, 1003, 1271, 1318
BseLI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1051, 1260, 1339
BseMI	GCAATG	2 cut(s)	468, 1266
BseMII	CTCAG	7 cut(s)	57, 748, 837, 852, 1008, 1145, 1348
BseNI	ACTGG	2 cut(s)	59, 513
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	6 cut(s)	334, 914, 917, 1099, 1273, 1301
BsgI	GTGCAG	1 cut(s)	921
BshFI	GGCC	3 cut(s)	280, 822, 962
BshNI	GGYRCC	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1051, 1260, 1339
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	2 cut(s)	550, 1372
BsnI	GGCC	3 cut(s)	280, 822, 962
BsoBI	CYCGRG	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	72, 529
Bsp143I	GATC	2 cut(s)	269, 972
Bsp19I	CCATGG	1 cut(s)	1152
BspACI	CCGC	3 cut(s)	328, 466, 689
BspANI	GGCC	3 cut(s)	280, 822, 962
BspCNI	CTCAG	7 cut(s)	58, 747, 838, 853, 1009, 1144, 1347
BspHI	TCATGA	2 cut(s)	121, 1197
BspLI	GGNNCC	3 cut(s)	715, 867, 1150
BspMAI	CTGCAG	1 cut(s)	1291
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	468, 1266
BsrI	ACTGG	2 cut(s)	59, 513
BssECI	CCNNGG	1 cut(s)	1152
BssMI	GATC	2 cut(s)	269, 972
BssNAI	GTATAC	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	1152
Bst1107I	GTATAC	1 cut(s)	890
Bst4CI	ACNGT	3 cut(s)	79, 614, 1168
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	114, 1177, 1284
BstDSI	CCRYGG	1 cut(s)	1152
BstENI	CCTNNNNNAGG	1 cut(s)	1337
BstF5I	GGATG	6 cut(s)	333, 954, 963, 1003, 1271, 1318
BstKTI	GATC	2 cut(s)	272, 975
BstMBI	GATC	2 cut(s)	269, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	363, 1238, 1328
BstSFI	CTRYAG	2 cut(s)	631, 1287
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	6 cut(s)	334, 914, 917, 1099, 1273, 1301
BstX2I	RGATCY	2 cut(s)	269, 972
BstYI	RGATCY	2 cut(s)	269, 972
BstZ17I	GTATAC	1 cut(s)	890
BsuRI	GGCC	3 cut(s)	280, 822, 962
BtgI	CCRYGG	1 cut(s)	1152
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	333, 954, 963, 1003, 1271, 1318
BtsIMutI	CAGTG	2 cut(s)	742, 858
Cac8I	GCNNGC	3 cut(s)	114, 1177, 1284
CaiI	CAGNNNCTG	2 cut(s)	65, 1016
CciI	TCATGA	2 cut(s)	121, 1197
Cfr13I	GGNCC	3 cut(s)	41, 279, 1038
CseI	GACGC	1 cut(s)	1221
Csp6I	GTAC	3 cut(s)	56, 510, 1349
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviQI	GTAC	3 cut(s)	56, 510, 1349
DpnI	GATC	2 cut(s)	271, 974
DpnII	GATC	2 cut(s)	269, 972
DraIII	CACNNNGTG	2 cut(s)	899, 932
EaeI	YGGCCR	1 cut(s)	960
Eco130I	CCWWGG	1 cut(s)	1152
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	41, 1038
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	659
EcoNI	CCTNNNNNAGG	1 cut(s)	1337
EcoT14I	CCWWGG	1 cut(s)	1152
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	1152
FaqI	GGGAC	1 cut(s)	794
FblI	GTMKAC	1 cut(s)	889
Fnu4HI	GCNGC	6 cut(s)	323, 903, 906, 1113, 1287, 1290
FokI	GGATG	6 cut(s)	320, 950, 961, 1010, 1258, 1325
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	6 cut(s)	323, 903, 906, 1113, 1287, 1290
FspBI	CTAG	2 cut(s)	582, 915
GluI	GCNGC	6 cut(s)	323, 903, 906, 1113, 1287, 1290
HaeIII	GGCC	3 cut(s)	280, 822, 962
HgaI	GACGC	1 cut(s)	1221
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	227, 936
HinfI	GANTC	4 cut(s)	261, 284, 787, 806
HpaI	GTTAAC	1 cut(s)	801
HphI	GGTGA	4 cut(s)	383, 915, 944, 1091
Hpy166II	GTNNAC	4 cut(s)	217, 801, 890, 1038
Hpy188I	TCNGA	6 cut(s)	187, 338, 795, 1109, 1164, 1337
Hpy188III	TCNNGA	9 cut(s)	44, 65, 122, 500, 536, 659, 779, 1030, 1198
Hpy8I	GTNNAC	4 cut(s)	217, 801, 890, 1038
HpyAV	CCTTC	8 cut(s)	86, 237, 362, 740, 812, 879, 998, 1302
HpyCH4III	ACNGT	3 cut(s)	79, 614, 1168
HpyCH4IV	ACGT	2 cut(s)	523, 1058
HpyF10VI	GCNNNNNNNGC	3 cut(s)	363, 1238, 1328
HpySE526I	ACGT	2 cut(s)	523, 1058
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	269, 972
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	6 cut(s)	334, 914, 917, 1099, 1273, 1301
LweI	GCATC	2 cut(s)	1219, 1280
MaeI	CTAG	2 cut(s)	582, 915
MaeII	ACGT	2 cut(s)	523, 1058
MaeIII	GTNAC	4 cut(s)	381, 468, 682, 1233
MalI	GATC	2 cut(s)	271, 974
MboI	GATC	2 cut(s)	269, 972
MboII	GAAGA	3 cut(s)	59, 314, 782
MfeI	CAATTG	2 cut(s)	132, 1116
MflI	RGATCY	2 cut(s)	269, 972
MhlI	GDGCHC	2 cut(s)	72, 529
MluCI	AATT	5 cut(s)	132, 293, 346, 824, 1116
MmeI	TCCRAC	2 cut(s)	1126, 1187
MseI	TTAA	2 cut(s)	800, 851
MunI	CAATTG	2 cut(s)	132, 1116
Mva1269I	GAATGC	2 cut(s)	550, 1372
MwoI	GCNNNNNNNGC	3 cut(s)	363, 1238, 1328
NcoI	CCATGG	1 cut(s)	1152
NdeII	GATC	2 cut(s)	269, 972
NlaIV	GGNNCC	3 cut(s)	715, 867, 1150
NmuCI	GTSAC	1 cut(s)	1233
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	2 cut(s)	121, 1197
PctI	GAATGC	2 cut(s)	550, 1372
PfeI	GAWTC	4 cut(s)	261, 284, 787, 806
PflMI	CCANNNNNTGG	2 cut(s)	79, 456
PkrI	GCNGC	6 cut(s)	324, 904, 907, 1114, 1288, 1291
PspN4I	GGNNCC	3 cut(s)	715, 867, 1150
PspPI	GGNCC	3 cut(s)	41, 279, 1038
PstI	CTGCAG	1 cut(s)	1291
PstNI	CAGNNNCTG	2 cut(s)	65, 1016
PsuI	RGATCY	2 cut(s)	269, 972
RsaI	GTAC	3 cut(s)	57, 511, 1350
RsaNI	GTAC	3 cut(s)	56, 510, 1349
SaqAI	TTAA	2 cut(s)	800, 851
SatI	GCNGC	6 cut(s)	323, 903, 906, 1113, 1287, 1290
Sau3AI	GATC	2 cut(s)	269, 972
Sau96I	GGNCC	3 cut(s)	41, 279, 1038
SduI	GDGCHC	2 cut(s)	72, 529
SfaNI	GCATC	2 cut(s)	1219, 1280
SfcI	CTRYAG	2 cut(s)	631, 1287
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	41, 1038
Sse9I	AATT	5 cut(s)	132, 293, 346, 824, 1116
SsiI	CCGC	3 cut(s)	328, 466, 689
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	2 cut(s)	582, 915
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	3 cut(s)	79, 614, 1168
TaiI	ACGT	2 cut(s)	526, 1061
TaqI	TCGA	2 cut(s)	17, 768
TasI	AATT	5 cut(s)	132, 293, 346, 824, 1116
TatI	WGTACW	1 cut(s)	1348
TfiI	GAWTC	4 cut(s)	261, 284, 787, 806
Tru1I	TTAA	2 cut(s)	800, 851
Tru9I	TTAA	2 cut(s)	800, 851
TscAI	CASTG	2 cut(s)	742, 865
TseFI	GTSAC	1 cut(s)	1233
TseI	GCWGC	6 cut(s)	322, 902, 905, 1112, 1286, 1289
Tsp45I	GTSAC	1 cut(s)	1233
TspDTI	ATGAA	9 cut(s)	110, 114, 138, 422, 467, 579, 620, 1014, 1017
TspGWI	ACGGA	1 cut(s)	1082
TspRI	CASTG	2 cut(s)	742, 865
Van91I	CCANNNNNTGG	2 cut(s)	79, 456
VpaK11BI	GGWCC	2 cut(s)	41, 1038
XagI	CCTNNNNNAGG	1 cut(s)	1337
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	889
XspI	CTAG	2 cut(s)	582, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.