Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010672

Physical Location & Seq

Genomic Coordinates Reverse (-)

14338069 .. 14345184

Gene Structure 7116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG167600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGGGGTGTGGGTGTTCGAAGCTCTATGCGTGTTGTGGAGGTCCAGAAGATAATGTACCAGTTCCTGAGCCCCAGACTGTGGAAAATGAGGAAGGAAATGAACTTGATTTGCCTGCATTTCATGAATACACAATTGAGCAACTTAGGACAGCGACATCAGGGTTTGCTGTTGAGAATATAGTTTCTGAACATGGGGAGAAAGCCCCTAATGTTGTTTACAAGGGGAAGCTTGACAATCAAAGAAGGATTGCTGTCAAAAGATTCAATAGATCTGCTTGGCCTGATTCTCGTCAATTTTTGGAAGAAGCAAGGTCTGTGGGGCAGCTCCGCAACATCCGATTAGCAAATTTACTTGGCTGTTGTTGTGAAGGTGATGAGAGGTTACTTGTTGCTGAATATATGCCCAACGATACATTGGCAAAGCATTTATTTCATTGGGAAACCCAACCCATGAAGTGGGCAATGCGGTTACGGGTGGCTTTATATCTTGCACAGGCTCTTGAATATTGTACCAGTAGAGGACGTGCCCTTTATCACGATTTGAATGCTTATAGAATAGTTTTTGATGATGAGGGAAACCCTAGACTTTCATGCTTTGGTATGATGAAAAACAGTAGAGATGGGAAAAGCTACAGCACAAATCTGGCATTTACTCCTCCCGAGTATCTAAGGACAGGGAGAGTAACTGCGGAAAGTGTAATGTATAGCTTTGGCACCCTTTTGCTTGACCTTCTCAGCGGAAAACATATTCCTCCAAGCCATGCACTCGACCTTATTCGGGACAGGAATCTTCAGATGTTAACAGATTCTTGTTTGGAAGGCCAATTTACAAATGATGAGGGAACTGAGTTAGTACGTTTAGCTTCACGATGTTTGCAATATGAACCCAGAGAGCGTCCTAATCCAAAGTCATTAGTTGCTGCTTTGGTTCCTCTCCAGAAGGACACTGAGGTTCCTTCTCATGTATTGATGGGTATACCACATGGTGCAGCAGCTTTACCTAGTCTATCACCATTTGGTGAAGCTTGTGTGAGGATGGATTTGACGGCCATCCATGAGATCTTAGAAAGTATTGGATATAAGGATGATGAAGGAGCAGCGACTGAGCTTTCATTCCAGATGTGGACCAACCAAATGCAGGACACGTTGAACTCGAAGAAAAAGGGTGATGTTTCTTTCCGTCATAAAGATTTCAGAGCTGCAATTGATTGCTTCACTCAGTTTATTGATGTTGGAACCATGGTTTCTCCGACGGTTTATGCACGCCGTAGTTTGTCTTATCTCATGAGTGAAATGCCACAGGAAGCCTTGAATGATGCGTCACAAGCCCAAGTGATTTCCCCTATTTGGCACATTGCATCCTATTTGCAAGCTGCAGCTCTTTTTTCACTTGGAAGGGATGATGAGGCACAAGTAGCCCTCAGAGAGGGTTCTGTACTTGAAACTAAAAGGAATGCAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030054 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

488

Amino Acids

54.62

Weight (kDa)

5.5

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 308	1e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	71 - 306	1e-21	Protein kinase domain
TPR_BSK1_C	PF25575	341 - 458	2.9e-62	Serine/threonine-protein kinase BSK1-like, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63500 AT5G41260
fragaria_vesca	FvH4_5g02320 FvH4_5g02320 FvH4_5g02320
malus_domestica	MD06G1082000.v1.1
prunus_persica	Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1 Prupe.5G099200_v2.0.a1
pyrus_communis	pycom06g07890
rosa_chinensis	RchiOBHm_Chr7g0197831
rosa_multiflora	Rmu_sc0001082.1_g000020
rosa_roxburghii	Rroxscaffold_3G00258180
rosa_rugosa	Rorug07G0043800
rosa_samantha	Rh7AG167600 Rh7BG170500 Rh7CG177000 Rh7DG169500
rosa_wichuraiana	Rw7G014610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	713
AccB7I	CCANNNNNTGG	2 cut(s)	79, 456
AccI	GTMKAC	1 cut(s)	976
AciI	CCGC	4 cut(s)	328, 466, 689, 738
AcoI	YGGCCR	1 cut(s)	1047
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	776
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	4 cut(s)	57, 511, 855, 1437
AfiI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1138, 1347, 1426
AflIII	ACRYGT	1 cut(s)	1143
AgsI	TTSAA	6 cut(s)	265, 503, 544, 1150, 1312, 1442
AjiI	CACGTC	1 cut(s)	524
AlwNI	CAGNNNCTG	2 cut(s)	65, 1103
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	3 cut(s)	278, 820, 1047
ApeKI	GCWGC	8 cut(s)	322, 920, 989, 992, 1097, 1199, 1373, 1376
ApoI	RAATTY	1 cut(s)	346
AspS9I	GGNCC	2 cut(s)	41, 1125
AsuHPI	GGTGA	4 cut(s)	383, 1002, 1031, 1178
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	41, 1125
BaeGI	GKGCMC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	713
BanII	GRGCYC	1 cut(s)	72
BarI	GAAGNNNNNNTAC	2 cut(s)	39, 71
BbvI	GCAGC	8 cut(s)	334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BccI	CCATC	4 cut(s)	614, 964, 1030, 1058
BceAI	ACGGC	2 cut(s)	1062, 1251
BcgI	CGANNNNNNTGC	2 cut(s)	527, 561
BfaI	CTAG	2 cut(s)	582, 1002
BfmI	CTRYAG	2 cut(s)	631, 1374
BglII	AGATCT	2 cut(s)	269, 1059
BisI	GCNGC	8 cut(s)	323, 921, 990, 993, 1098, 1200, 1374, 1377
BlsI	GCNGC	8 cut(s)	324, 922, 991, 994, 1099, 1201, 1375, 1378
Bme18I	GGWCC	2 cut(s)	41, 1125
BmeT110I	CYCGRG	1 cut(s)	659
BmgBI	CACGTC	1 cut(s)	524
BmgT120I	GGNCC	2 cut(s)	41, 1125
BmiI	GGNNCC	4 cut(s)	715, 930, 954, 1237
BmsI	GCATC	2 cut(s)	1306, 1367
BpmI	CTGGAG	1 cut(s)	920
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	1239
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1138, 1347, 1426
Bse1I	ACTGG	2 cut(s)	59, 513
Bse3DI	GCAATG	2 cut(s)	468, 1353
BseDI	CCNNGG	1 cut(s)	1239
BseGI	GGATG	6 cut(s)	333, 1041, 1050, 1090, 1358, 1405
BseLI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1138, 1347, 1426
BseMI	GCAATG	2 cut(s)	468, 1353
BseMII	CTCAG	7 cut(s)	57, 748, 837, 939, 1095, 1232, 1435
BseNI	ACTGG	2 cut(s)	59, 513
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	529
BseXI	GCAGC	8 cut(s)	334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	3 cut(s)	280, 822, 1049
BshNI	GGYRCC	1 cut(s)	713
BsiHKCI	CYCGRG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	6 cut(s)	79, 456, 778, 1138, 1347, 1426
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	2 cut(s)	550, 1459
BsnI	GGCC	3 cut(s)	280, 822, 1049
BsoBI	CYCGRG	1 cut(s)	659
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	72, 529
Bsp143I	GATC	2 cut(s)	269, 1059
Bsp19I	CCATGG	1 cut(s)	1239
BspACI	CCGC	4 cut(s)	328, 466, 689, 738
BspANI	GGCC	3 cut(s)	280, 822, 1049
BspCNI	CTCAG	7 cut(s)	58, 747, 838, 940, 1096, 1231, 1434
BspHI	TCATGA	2 cut(s)	121, 1284
BspLI	GGNNCC	4 cut(s)	715, 930, 954, 1237
BspMAI	CTGCAG	1 cut(s)	1378
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	468, 1353
BsrI	ACTGG	2 cut(s)	59, 513
BssECI	CCNNGG	1 cut(s)	1239
BssMI	GATC	2 cut(s)	269, 1059
BssNAI	GTATAC	1 cut(s)	977
BssT1I	CCWWGG	1 cut(s)	1239
Bst1107I	GTATAC	1 cut(s)	977
Bst4CI	ACNGT	3 cut(s)	79, 614, 1255
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	114, 1264, 1371
BstDSI	CCRYGG	1 cut(s)	1239
BstENI	CCTNNNNNAGG	1 cut(s)	1424
BstF5I	GGATG	6 cut(s)	333, 1041, 1050, 1090, 1358, 1405
BstKTI	GATC	2 cut(s)	272, 1062
BstMBI	GATC	2 cut(s)	269, 1059
BstMWI	GCNNNNNNNGC	2 cut(s)	1325, 1415
BstSFI	CTRYAG	2 cut(s)	631, 1374
BstSLI	GKGCMC	1 cut(s)	529
BstV1I	GCAGC	8 cut(s)	334, 907, 1001, 1004, 1109, 1186, 1360, 1388
BstX2I	RGATCY	2 cut(s)	269, 1059
BstYI	RGATCY	2 cut(s)	269, 1059
BstZ17I	GTATAC	1 cut(s)	977
BsuRI	GGCC	3 cut(s)	280, 822, 1049
BtgI	CCRYGG	1 cut(s)	1239
BtrI	CACGTC	1 cut(s)	524
BtsCI	GGATG	6 cut(s)	333, 1041, 1050, 1090, 1358, 1405
BtsIMutI	CAGTG	1 cut(s)	945
Cac8I	GCNNGC	3 cut(s)	114, 1264, 1371
CaiI	CAGNNNCTG	2 cut(s)	65, 1103
CciI	TCATGA	2 cut(s)	121, 1284
Cfr13I	GGNCC	2 cut(s)	41, 1125
CseI	GACGC	2 cut(s)	884, 1308
Csp6I	GTAC	4 cut(s)	56, 510, 854, 1436
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviQI	GTAC	4 cut(s)	56, 510, 854, 1436
DpnI	GATC	2 cut(s)	271, 1061
DpnII	GATC	2 cut(s)	269, 1059
DraIII	CACNNNGTG	1 cut(s)	986
EaeI	YGGCCR	1 cut(s)	1047
Eco130I	CCWWGG	1 cut(s)	1239
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	41, 1125
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	659
EcoNI	CCTNNNNNAGG	1 cut(s)	1424
EcoT14I	CCWWGG	1 cut(s)	1239
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	1239
FaqI	GGGAC	1 cut(s)	794
FblI	GTMKAC	1 cut(s)	976
Fnu4HI	GCNGC	8 cut(s)	323, 921, 990, 993, 1098, 1200, 1374, 1377
FokI	GGATG	6 cut(s)	320, 1037, 1048, 1097, 1345, 1412
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	8 cut(s)	323, 921, 990, 993, 1098, 1200, 1374, 1377
FspBI	CTAG	2 cut(s)	582, 1002
GluI	GCNGC	8 cut(s)	323, 921, 990, 993, 1098, 1200, 1374, 1377
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	3 cut(s)	280, 822, 1049
HgaI	GACGC	2 cut(s)	884, 1308
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	2 cut(s)	227, 1023
HinfI	GANTC	4 cut(s)	261, 284, 787, 806
HpaI	GTTAAC	1 cut(s)	801
HphI	GGTGA	4 cut(s)	383, 1002, 1031, 1178
Hpy166II	GTNNAC	4 cut(s)	217, 801, 977, 1125
Hpy188I	TCNGA	6 cut(s)	187, 338, 795, 1196, 1251, 1424
Hpy8I	GTNNAC	4 cut(s)	217, 801, 977, 1125
Hpy99I	CGWCG	1 cut(s)	1255
HpyAV	CCTTC	9 cut(s)	86, 237, 362, 740, 812, 934, 966, 1085, 1389
HpyCH4III	ACNGT	3 cut(s)	79, 614, 1255
HpyCH4IV	ACGT	3 cut(s)	523, 856, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1325, 1415
HpySE526I	ACGT	3 cut(s)	523, 856, 1145
KspAI	GTTAAC	1 cut(s)	801
Kzo9I	GATC	2 cut(s)	269, 1059
LmnI	GCTCC	2 cut(s)	330, 1094
Lsp1109I	GCAGC	8 cut(s)	334, 907, 1001, 1004, 1109, 1186, 1360, 1388
LweI	GCATC	2 cut(s)	1306, 1367
MaeI	CTAG	2 cut(s)	582, 1002
MaeII	ACGT	3 cut(s)	523, 856, 1145
MaeIII	GTNAC	4 cut(s)	381, 468, 682, 1320
MalI	GATC	2 cut(s)	271, 1061
MboI	GATC	2 cut(s)	269, 1059
MboII	GAAGA	4 cut(s)	59, 314, 782, 1168
MfeI	CAATTG	2 cut(s)	132, 1203
MflI	RGATCY	2 cut(s)	269, 1059
MhlI	GDGCHC	2 cut(s)	72, 529
MluCI	AATT	5 cut(s)	132, 293, 346, 824, 1203
MmeI	TCCRAC	2 cut(s)	1213, 1274
MseI	TTAA	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	738
MunI	CAATTG	2 cut(s)	132, 1203
Mva1269I	GAATGC	2 cut(s)	550, 1459
MwoI	GCNNNNNNNGC	2 cut(s)	1325, 1415
NcoI	CCATGG	1 cut(s)	1239
NdeII	GATC	2 cut(s)	269, 1059
NlaIV	GGNNCC	4 cut(s)	715, 930, 954, 1237
NmuCI	GTSAC	1 cut(s)	1320
NspV	TTCGAA	1 cut(s)	17
PagI	TCATGA	2 cut(s)	121, 1284
PcsI	WCGNNNNNNNCGW	1 cut(s)	1151
PctI	GAATGC	2 cut(s)	550, 1459
PfeI	GAWTC	4 cut(s)	261, 284, 787, 806
PflMI	CCANNNNNTGG	2 cut(s)	79, 456
PkrI	GCNGC	8 cut(s)	324, 922, 991, 994, 1099, 1201, 1375, 1378
PspN4I	GGNNCC	4 cut(s)	715, 930, 954, 1237
PspPI	GGNCC	2 cut(s)	41, 1125
PstI	CTGCAG	1 cut(s)	1378
PstNI	CAGNNNCTG	2 cut(s)	65, 1103
PsuI	RGATCY	2 cut(s)	269, 1059
RsaI	GTAC	4 cut(s)	57, 511, 855, 1437
RsaNI	GTAC	4 cut(s)	56, 510, 854, 1436
SaqAI	TTAA	1 cut(s)	800
SatI	GCNGC	8 cut(s)	323, 921, 990, 993, 1098, 1200, 1374, 1377
Sau3AI	GATC	2 cut(s)	269, 1059
Sau96I	GGNCC	2 cut(s)	41, 1125
SduI	GDGCHC	2 cut(s)	72, 529
SfaNI	GCATC	2 cut(s)	1306, 1367
SfcI	CTRYAG	2 cut(s)	631, 1374
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	41, 1125
Sse9I	AATT	5 cut(s)	132, 293, 346, 824, 1203
SsiI	CCGC	4 cut(s)	328, 466, 689, 738
SspI	AATATT	1 cut(s)	506
SspMI	CTAG	2 cut(s)	582, 1002
StyI	CCWWGG	1 cut(s)	1239
TaaI	ACNGT	3 cut(s)	79, 614, 1255
TaiI	ACGT	3 cut(s)	526, 859, 1148
TaqI	TCGA	3 cut(s)	17, 768, 1154
TasI	AATT	5 cut(s)	132, 293, 346, 824, 1203
TatI	WGTACW	1 cut(s)	1435
TfiI	GAWTC	4 cut(s)	261, 284, 787, 806
Tru1I	TTAA	1 cut(s)	800
Tru9I	TTAA	1 cut(s)	800
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	1320
TseI	GCWGC	8 cut(s)	322, 920, 989, 992, 1097, 1199, 1373, 1376
Tsp45I	GTSAC	1 cut(s)	1320
TspGWI	ACGGA	1 cut(s)	1169
TspRI	CASTG	1 cut(s)	952
Van91I	CCANNNNNTGG	2 cut(s)	79, 456
VpaK11BI	GGWCC	2 cut(s)	41, 1125
XagI	CCTNNNNNAGG	1 cut(s)	1424
XapI	RAATTY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	976
XspI	CTAG	2 cut(s)	582, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.