AT1G63850

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013310
Physical Location & Seq
Forward (+)
23696720 .. 23699030
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63850.1

Sequence Viewer

Length: 1647 bp
ATGGATTACTCTACGGCTACGACGACGGCGGGGAACGGTTACAGTTCGCCGCGTGACTCTTCTTTCCCTTCGAGCTTCACTAAGTTCAACTCCGCTTTAACGGCAGGTCTTCTAAATCCAATGTCTCCTCCTCCGCCTCCGGCGATGCACGACAAGACACGATCAAGTCCGACGCTGTTCGAAATGATGGCTAGTGAAGCTGATACCATAGGGAAAGTTCCAGTTCAGATCCATAACGGTGTGCTTCCATCTCCGTCGTCGTCTTCATCGTCTTCTTCTGCGGCGGCTACGGCTGCGAGGACGACGAATGTGAATCATCTTGTTATTTCAGCTCAGGATAAGCAAGCGCTTGCGATGCAACGGATTTCGGATCTTCTGGTGATTCGGAGCCCCGGGAATCAGTTCAATGACCCGAATTCGAGTGATGTGAAGCTGACTCTGAGCTCTAAAGATGGGATTAGTATCACCATGTGTGTTCATAGGCAGATTCTTGTAGCTCACAGTAGGTTTTTCGCTATGAAATTGTCGGATCGATGGTCTAAACAGCAGCTGCCGCCGTCGTCTTCTCCGTACATTGTTGAGATCTCAGATTGTGATGACGTTGAGGTGTATATTGAGACGTTGATGCTGATGTACTGCAGAGATCTAAGGAAGAAGATGATGAGACATGATGTTTCTAGGGTTCTTGGTATTTTGAAGGTTTCAGCAGCAATTGGGTTTGATGCTGGAGTGCTTTCATGTCTGGAGTACTTGGAAGCAGCACCATGGTCAGAGGATGAAGAATACAGGATTGCTTCTTTGTTGTCTGAGCTACACCTTGAAAACGTTGGGGCAACTGAAGTTTTGAGAAGAGTTTCTGTAGAAGCTAGCAATGGGAATAACGGGAGTAACGGTGGGAGCAATGACGAGGTGCTTTTGAATCTTTTGCATATTGTTCTTGAGGGAAAAGATGAGAAAGCAAGGCGTGATATGAAAACACTTGTTTCCAAAATGCTTAGAGAGAACTCGTCTGGAAATGATCTTAGGAAAGAGTCGTTGTACTTGGCTTGTGATGGGTGTTTGCATAAGCTTAAGCGGCAGTTTCTACAAGCAGCAGAGTCGGATTTGGAGAATGTTGACCAGATAGCAAGACAAGCGGATAATCTGCATTGGATTTTGGATATTTTGATAGATAGACAAATCGCAGAGGATTTTATTGTGATGTGGGCTTCTCTTTCTGAGCTATCCGAGGTACATTCTAAGGTCCCTGTTGTTCACAGGTTTGAGATTAGCAGAGTAACAGCGAGGATCTTTGTTGGAATTGGAAAGGGACAAATTCTGACACCGAAAGAAGTGAGGTGTTTGCTGCTGAGGAATTGGTTGACACCTTTCTATGATGATTTTGGGTGGATGAGGAGAGCTTCGAAAGGGCTTGATCGGTATTTAATCGAGGATGGTTTAAGCAATACCATTCTGACTCTTCCTCTTGCTTGGCAACAAGAGTTTTTCCTAGCTTGGTTTGATCGGTTCTTGAACTCTAATGAAGACTGTCCTAATATCCAGAGAGGGTTCGAAGTTTGGTGGAGACGGGCGTTTTGGAGACGGAAAGAACAGAGTCAAGAGCCTGCTCGGCTAAGAGTCACCGCTTCAGCCACTGAAAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

548

Amino Acids

61.49

Weight (kDa)

6.11

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 300 - 527 3.9e-60 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63850
fragaria_vesca FvH4_5g02930 FvH4_5g02930
malus_domestica MD06G1088400.v1.1 MD14G1109500.v1.1
prunus_persica Prupe.5G104400_v2.0.a1
pyrus_communis pycom06g08440 pycom14g10360
rosa_chinensis RchiOBHm_Chr7g0196961
rosa_laevigata RLG00000003977
rosa_multiflora Rmu_sc0001083.1_g000006
rosa_roxburghii Rroxscaffold_3G00258800
rosa_rugosa Rorug07G0037000
rosa_samantha Rh7AG161400 Rh7BG163600 Rh7CG169600 Rh7DG162900
rosa_wichuraiana Rw7G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 95
AccII CGCG 1 cut(s) 52
AclI AACGTT 1 cut(s) 825
AclWI GGATC 4 cut(s) 223, 378, 537, 1295
AcsI RAATTY 2 cut(s) 415, 1314
AcuI CTGAAG 2 cut(s) 858, 1611
AdeI CACNNNGTG 1 cut(s) 471
AfaI GTAC 5 cut(s) 572, 635, 749, 1040, 1233
AfeI AGCGCT 1 cut(s) 348
AflII CTTAAG 1 cut(s) 1070
AgsI TTSAA 6 cut(s) 88, 406, 697, 821, 919, 1513
Alw21I GWGCWC 1 cut(s) 446
Alw26I GTCTC 5 cut(s) 129, 611, 658, 1558, 1573
AlwI GGATC 4 cut(s) 223, 378, 537, 1295
AlwNI CAGNNNCTG 2 cut(s) 550, 1634
Ama87I CYCGRG 1 cut(s) 392
Aor51HI AGCGCT 1 cut(s) 348
ApeKI GCWGC 7 cut(s) 293, 547, 550, 707, 758, 1091, 1345
ApoI RAATTY 2 cut(s) 415, 1314
ArsI GACNNNNNNTTYG 2 cut(s) 1557, 1589
Asp700I GAANNNNTTC 2 cut(s) 401, 853
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 1243
AsuC2I CCSGG 2 cut(s) 393, 394
AsuHPI GGTGA 3 cut(s) 391, 457, 1612
AsuII TTCGAA 3 cut(s) 180, 1403, 1551
AsuNHI GCTAGC 1 cut(s) 866
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 1243
BanII GRGCYC 2 cut(s) 392, 446
BbsI GAAGAC 5 cut(s) 101, 255, 264, 555, 1530
Bbv12I GWGCWC 1 cut(s) 446
BbvCI CCTCAGC 1 cut(s) 1349
BbvI GCAGC 7 cut(s) 280, 537, 559, 719, 770, 1103, 1332
BccI CCATC 6 cut(s) 181, 256, 446, 528, 1046, 1427
BceAI ACGGC 5 cut(s) 30, 42, 117, 306, 541
BcgI CGANNNNNNTGC 2 cut(s) 1080, 1114
BcnI CCSGG 2 cut(s) 393, 394
BcoDI GTCTC 5 cut(s) 129, 611, 658, 1558, 1573
BfaI CTAG 4 cut(s) 192, 678, 867, 1490
BfmI CTRYAG 2 cut(s) 637, 858
BfoI RGCGCY 1 cut(s) 350
BfrI CTTAAG 1 cut(s) 1070
BfuAI ACCTGC 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 1609
BglII AGATCT 2 cut(s) 582, 643
BmcAI AGTACT 1 cut(s) 749
Bme1390I CCNGG 2 cut(s) 393, 394
Bme18I GGWCC 1 cut(s) 1243
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 1243
BmiI GGNNCC 2 cut(s) 389, 1245
BmrFI CCNGG 2 cut(s) 393, 394
BmsI GCATC 4 cut(s) 135, 345, 615, 712
BmtI GCTAGC 1 cut(s) 870
BpiI GAAGAC 5 cut(s) 101, 255, 264, 555, 1530
BpmI CTGGAG 2 cut(s) 747, 764
Bpu10I CCTNAGC 2 cut(s) 333, 1349
Bpu14I TTCGAA 3 cut(s) 180, 1403, 1551
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 2 cut(s) 393, 394
Bsa29I ATCGAT 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 461
BsaJI CCNNGG 4 cut(s) 391, 392, 764, 1227
BsaXI ACNNNNNCTCC 2 cut(s) 877, 907
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 2 cut(s) 877, 907
Bse8I GATNNNNATC 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 4 cut(s) 391, 392, 764, 1227
BseGI GGATG 3 cut(s) 781, 1395, 1438
BseJI GATNNNNATC 1 cut(s) 461
BseMI GCAATG 2 cut(s) 877, 907
BseMII CTCAG 6 cut(s) 347, 431, 600, 798, 1209, 1340
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 3 cut(s) 117, 120, 1408
BseXI GCAGC 7 cut(s) 280, 537, 559, 719, 770, 1103, 1332
Bsh1236I CGCG 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 446
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 140, 393
BslFI GGGAC 2 cut(s) 1229, 1323
BsmAI GTCTC 5 cut(s) 129, 611, 658, 1558, 1573
BsmBI CGTCTC 3 cut(s) 611, 1558, 1573
BsmFI GGGAC 2 cut(s) 1229, 1323
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 3 cut(s) 180, 1403, 1551
Bsp1286I GDGCHC 2 cut(s) 392, 446
Bsp19I CCATGG 1 cut(s) 764
BspCNI CTCAG 6 cut(s) 346, 432, 599, 799, 1210, 1341
BspDI ATCGAT 1 cut(s) 532
BspFNI CGCG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 389, 1245
BspMAI CTGCAG 1 cut(s) 641
BspMI ACCTGC 1 cut(s) 95
BspOI GCTAGC 1 cut(s) 870
BspPI GGATC 4 cut(s) 223, 378, 537, 1295
BspT104I TTCGAA 3 cut(s) 180, 1403, 1551
BspTI CTTAAG 1 cut(s) 1070
BsrDI GCAATG 2 cut(s) 877, 907
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 4 cut(s) 391, 392, 764, 1227
BssT1I CCWWGG 1 cut(s) 764
Bst4CI ACNGT 6 cut(s) 38, 44, 239, 503, 893, 1529
Bst6I CTCTTC 3 cut(s) 64, 844, 1464
BstAFI CTTAAG 1 cut(s) 1070
BstBI TTCGAA 3 cut(s) 180, 1403, 1551
BstC8I GCNNGC 4 cut(s) 345, 351, 868, 1605
BstDSI CCRYGG 1 cut(s) 764
BstF5I GGATG 3 cut(s) 781, 1395, 1438
BstFNI CGCG 1 cut(s) 52
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstMAI GTCTC 5 cut(s) 129, 611, 658, 1558, 1573
BstMWI GCNNNNNNNGC 9 cut(s) 101, 197, 290, 293, 355, 553, 1075, 1133, 1609
BstSCI CCNGG 2 cut(s) 391, 392
BstSFI CTRYAG 2 cut(s) 637, 858
BstUI CGCG 1 cut(s) 52
BstV1I GCAGC 7 cut(s) 280, 537, 559, 719, 770, 1103, 1332
BstV2I GAAGAC 5 cut(s) 101, 255, 264, 555, 1530
BstX2I RGATCY 5 cut(s) 228, 370, 582, 643, 1287
BstYI RGATCY 5 cut(s) 228, 370, 582, 643, 1287
Bsu15I ATCGAT 1 cut(s) 532
BsuTUI ATCGAT 1 cut(s) 532
BtgI CCRYGG 1 cut(s) 764
BtgZI GCGATG 2 cut(s) 158, 368
BtsCI GGATG 3 cut(s) 781, 1395, 1438
BtsIMutI CAGTG 1 cut(s) 1632
BveI ACCTGC 1 cut(s) 95
Cac8I GCNNGC 4 cut(s) 345, 351, 868, 1605
CaiI CAGNNNCTG 2 cut(s) 550, 1634
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 1243
Cfr9I CCCGGG 1 cut(s) 392
ClaI ATCGAT 1 cut(s) 532
CseI GACGC 1 cut(s) 181
Csp6I GTAC 5 cut(s) 571, 634, 748, 1039, 1232
CviAII CATG 4 cut(s) 469, 668, 738, 765
CviQI GTAC 5 cut(s) 571, 634, 748, 1039, 1232
DraIII CACNNNGTG 1 cut(s) 471
Eam1104I CTCTTC 3 cut(s) 64, 844, 1464
EarI CTCTTC 3 cut(s) 64, 844, 1464
EciI GGCGGA 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 764
Eco24I GRGCYC 2 cut(s) 392, 446
Eco47I GGWCC 1 cut(s) 1243
Eco47III AGCGCT 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 444
Eco57I CTGAAG 2 cut(s) 858, 1611
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 444
EcoO109I RGGNCCY 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 764
EcoT38I GRGCYC 2 cut(s) 392, 446
ErhI CCWWGG 1 cut(s) 764
Esp3I CGTCTC 3 cut(s) 611, 1558, 1573
FaeI CATG 4 cut(s) 472, 671, 741, 768
FaqI GGGAC 2 cut(s) 1229, 1323
FatI CATG 4 cut(s) 468, 667, 737, 764
FauI CCCGC 1 cut(s) 22
FokI GGATG 3 cut(s) 788, 1402, 1445
FriOI GRGCYC 2 cut(s) 392, 446
FspBI CTAG 4 cut(s) 192, 678, 867, 1490
GlaI GCGC 1 cut(s) 348
GsuI CTGGAG 2 cut(s) 747, 764
HaeII RGCGCY 1 cut(s) 350
HapII CCGG 2 cut(s) 140, 393
HgaI GACGC 1 cut(s) 181
HhaI GCGC 1 cut(s) 349
Hin1II CATG 4 cut(s) 472, 671, 741, 768
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 2 cut(s) 1117, 1362
HindII GTYRAC 2 cut(s) 1117, 1362
HindIII AAGCTT 1 cut(s) 1067
HpaII CCGG 2 cut(s) 140, 393
HphI GGTGA 3 cut(s) 391, 457, 1612
Hpy166II GTNNAC 3 cut(s) 1117, 1255, 1362
Hpy188III TCNNGA 7 cut(s) 335, 743, 938, 1011, 1510, 1540, 1598
Hpy8I GTNNAC 3 cut(s) 1117, 1255, 1362
Hpy99I CGWCG 7 cut(s) 25, 28, 175, 259, 262, 307, 562
HpyAV CCTTC 2 cut(s) 78, 691
HpyCH4III ACNGT 6 cut(s) 38, 44, 239, 503, 893, 1529
HpyCH4IV ACGT 3 cut(s) 600, 620, 825
HpyCH4V TGCA 6 cut(s) 148, 358, 639, 928, 1063, 1147
HpyF10VI GCNNNNNNNGC 9 cut(s) 101, 197, 290, 293, 355, 553, 1075, 1133, 1609
HpySE526I ACGT 3 cut(s) 600, 620, 825
Hsp92II CATG 4 cut(s) 472, 671, 741, 768
HspAI GCGC 1 cut(s) 347
LmnI GCTCC 2 cut(s) 387, 897
Lsp1109I GCAGC 7 cut(s) 280, 537, 559, 719, 770, 1103, 1332
LweI GCATC 4 cut(s) 135, 345, 615, 712
MaeI CTAG 4 cut(s) 192, 678, 867, 1490
MaeII ACGT 3 cut(s) 600, 620, 825
MaeIII GTNAC 5 cut(s) 38, 53, 887, 1276, 1618
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 5 cut(s) 228, 370, 582, 643, 1287
MhlI GDGCHC 2 cut(s) 392, 446
MluCI AATT 6 cut(s) 415, 521, 711, 1299, 1314, 1354
MlyI GAGTC 7 cut(s) 50, 430, 1040, 1106, 1450, 1603, 1626
MmeI TCCRAC 4 cut(s) 194, 507, 1080, 1276
MroXI GAANNNNTTC 2 cut(s) 401, 853
MseI TTAA 4 cut(s) 98, 1071, 1424, 1439
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 550
MspCI CTTAAG 1 cut(s) 1070
MspI CCGG 2 cut(s) 140, 393
MspR9I CCNGG 2 cut(s) 393, 394
MunI CAATTG 1 cut(s) 711
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 9 cut(s) 101, 197, 290, 293, 355, 553, 1075, 1133, 1609
NciI CCSGG 2 cut(s) 393, 394
NcoI CCATGG 1 cut(s) 764
NheI GCTAGC 1 cut(s) 866
NlaIII CATG 4 cut(s) 472, 671, 741, 768
NlaIV GGNNCC 2 cut(s) 389, 1245
NmeAIII GCCGAG 1 cut(s) 1588
NmuCI GTSAC 2 cut(s) 53, 1618
NspV TTCGAA 3 cut(s) 180, 1403, 1551
PcsI WCGNNNNNNNCGW 3 cut(s) 20, 266, 566
PdmI GAANNNNTTC 2 cut(s) 401, 853
PfeI GAWTC 5 cut(s) 313, 382, 397, 487, 919
PleI GAGTC 7 cut(s) 50, 430, 1039, 1105, 1450, 1602, 1625
PpsI GAGTC 7 cut(s) 50, 430, 1039, 1105, 1450, 1602, 1625
PpuMI RGGWCCY 1 cut(s) 1243
Psp124BI GAGCTC 1 cut(s) 446
Psp1406I AACGTT 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 1243
PspN4I GGNNCC 2 cut(s) 389, 1245
PspPI GGNCC 1 cut(s) 1243
PspPPI RGGWCCY 1 cut(s) 1243
PstI CTGCAG 1 cut(s) 641
PstNI CAGNNNCTG 2 cut(s) 550, 1634
PsuI RGATCY 5 cut(s) 228, 370, 582, 643, 1287
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 5 cut(s) 572, 635, 749, 1040, 1233
RsaNI GTAC 5 cut(s) 571, 634, 748, 1039, 1232
RseI CAYNNNNRTG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 446
SaqAI TTAA 4 cut(s) 98, 1071, 1424, 1439
Sau96I GGNCC 1 cut(s) 1243
ScaI AGTACT 1 cut(s) 749
SchI GAGTC 7 cut(s) 50, 430, 1040, 1106, 1450, 1603, 1626
ScrFI CCNGG 2 cut(s) 393, 394
SduI GDGCHC 2 cut(s) 392, 446
SfaNI GCATC 4 cut(s) 135, 345, 615, 712
SfcI CTRYAG 2 cut(s) 637, 858
SfuI TTCGAA 3 cut(s) 180, 1403, 1551
SinI GGWCC 1 cut(s) 1243
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 938, 1070
SmoI CTYRAG 2 cut(s) 938, 1070
Sse9I AATT 6 cut(s) 415, 521, 711, 1299, 1314, 1354
SspMI CTAG 4 cut(s) 192, 678, 867, 1490
SstI GAGCTC 1 cut(s) 446
StyD4I CCNGG 2 cut(s) 391, 392
StyI CCWWGG 1 cut(s) 764
TaaI ACNGT 6 cut(s) 38, 44, 239, 503, 893, 1529
TaiI ACGT 3 cut(s) 603, 623, 828
TaqI TCGA 7 cut(s) 71, 180, 419, 532, 1403, 1428, 1551
TasI AATT 6 cut(s) 415, 521, 711, 1299, 1314, 1354
TatI WGTACW 3 cut(s) 633, 747, 1038
TauI GCSGC 5 cut(s) 52, 284, 287, 556, 1078
TfiI GAWTC 5 cut(s) 313, 382, 397, 487, 919
Tru1I TTAA 4 cut(s) 98, 1071, 1424, 1439
Tru9I TTAA 4 cut(s) 98, 1071, 1424, 1439
TscAI CASTG 1 cut(s) 1639
TseFI GTSAC 2 cut(s) 53, 1618
TseI GCWGC 7 cut(s) 293, 547, 550, 707, 758, 1091, 1345
Tsp45I GTSAC 2 cut(s) 53, 1618
TspDTI ATGAA 7 cut(s) 255, 467, 533, 726, 792, 986, 1536
TspGWI ACGGA 4 cut(s) 243, 376, 558, 1597
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 1 cut(s) 1639
Vha464I CTTAAG 1 cut(s) 1070
VpaK11BI GGWCC 1 cut(s) 1243
XapI RAATTY 2 cut(s) 415, 1314
XmaI CCCGGG 1 cut(s) 392
XmnI GAANNNNTTC 2 cut(s) 401, 853
XspI CTAG 4 cut(s) 192, 678, 867, 1490
ZrmI AGTACT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.