Rroxscaffold_3G00258800

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013310
Physical Location & Seq
Forward (+)
53255423 .. 53257513
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00258800.1

Sequence Viewer

Length: 1779 bp
ATGGCAACAGCCACATCTACTAGTACTACTACTACTGCTACAGCTCTCAAAGCTCACCCCCATCAACAACCACCCACCAAACCCAGACGCCGCAACAACAACAACAACCCGACCCGGAAGCTCGACCCGCCGACGATTGTCTCCCCCGAGAACTCCTGGTGCTGTCCTGCTTCAAAACCAATCCCGACCAATTCCCGGCGCGGCGGACTACCCATTGACCCGACCCTCGAGCTCGACCCGGTTGAGGACTACCCATCTCCGAATTCTTCGCCGTCGTCGTCGTTCAGGATCCGGTTCTCTCCGGGCAGCTTATCCCCAGTCATGGACTTCACTCCGGCTTTGAGCAACGGTCACAACGATTCGTATAACTCGAGCTTCACTCGGTTCAATAGTATGCTCAATGCGGGTCTGCTGAACCCAATGTCGCCGCCTCCGCCGCGGTCCAGCCCGACCCTTTTCGAAATGATGGCCAGCGAGCCCGAAATGGCCAACCCGAAACCCGCCCAGATCCACCAAAACGGCGTCGCGCCGCCGCCGAGGACTACTCACATGGGTTTGGTCCAGGACAAGCAGGCGCTGATGATGCAGCGGGTTTCGGACCTCTTGGGTTCCCGGAGCCCCGGGAACCAGTTCAATGACCAGACCAACAGTGACATCAAGCTGACGTTGAGCTCCAAGGACGGGTTCAGCGTCTCGATGAGTCTGCACCGTCCGATTCTCATCGCGCACAGCCGGTTTTTCGCCGTGAAGCTCTCGGACAGGTGGGTCAAGCAGCAGAGAACGACGCCGTCTTCGTCGCCGCCGTACAATGTGGAGATTGCTGACTGTGATGACGTGGAGGTTTATATTGAGGCTTTGAGGTTGATGTATTGTAAGGATCTGAGGAAGAGGCTCATGAAGGAGGACGTTCCTAAAGTGCTTGGGATTTTGAAGGTTTCGGCGGCAATTGGGTTTGATGCTGGTGTTTTATCTTGTTTGGAGTACTTGGAGGCAGCGCCGTGGGCTGAGGAAGAAGAGGAGAAGGTGGCATCGCTGTTGTCGGAGCTGCGGCTTGAAGGTGTCGGAGCCGGGGAAGTGTTGAAGAGGGTGTCGTTGGAAGTGGCTAATGGGACTGAGGAGGGTAATGACAATGAAGAAGTTTTGGTAAAGCTTCTGCATGTGGTTCTTGAAGGAAAAGATGAGAAGGCAAGGCGCGAGATGAAAGGATTGGTGACAAAGATGCTTCCAGAGGCAGACTTGAAGGATGTGGGACAGATTGCAAGGCAAGCGGATAATTTGCATTGGATTTTGGATATTTTGATTGACAGACAAATGGCTGAGGATTTCTTGAAAACATGGGCATCTCAAACTGAGTTGTCTGAGTCGCATTCTAAAGTGGCTGCAGTTCATAGATATGAGGTTAGTAGAGTTACAGCTCGACTCTTTGTTGGTATTGGAAAGGGTCAGCTGTTGGCTTCCAAGGACGTGAGGTTCTTGCTTTTGCGTACATGGTTGGTGCCATTTTATGATGATTTTGGATGGATGAGGAGGGCATCAAAAGGCCTTGATAGGCACTTAATTGAGGATGGTCTGAGCAACACAATTCTTACCCTGCCTTTAGCATGGCAACAAGAAATTTTGCTTGCTTGGTTTAATCGGTTCCTGAACTCTGGTGAAGATTGCCCAAATATACAAAGAGGATTTGAAGTTTGGTGGAGGCGGTCCTTTTGGAGGCGGAATGGGGAGCAGGAAAGACCACGGCCATTACGAATTACAGCAGCAACCATTGAGAAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

592

Amino Acids

66.44

Weight (kDa)

7.2

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 416 - 571 6.3e-56 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63850
fragaria_vesca FvH4_5g02930 FvH4_5g02930
malus_domestica MD06G1088400.v1.1 MD14G1109500.v1.1
prunus_persica Prupe.5G104400_v2.0.a1
pyrus_communis pycom06g08440 pycom14g10360
rosa_chinensis RchiOBHm_Chr7g0196961
rosa_laevigata RLG00000003977
rosa_multiflora Rmu_sc0001083.1_g000006
rosa_roxburghii Rroxscaffold_3G00258800
rosa_rugosa Rorug07G0037000
rosa_samantha Rh7AG161400 Rh7BG163600 Rh7CG169600 Rh7DG162900
rosa_wichuraiana Rw7G014120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
AccB1I GGYRCC 1 cut(s) 1495
AccII CGCG 5 cut(s) 201, 439, 527, 725, 1194
AclWI GGATC 4 cut(s) 283, 296, 502, 885
AcoI YGGCCR 3 cut(s) 468, 486, 1739
AcsI RAATTY 2 cut(s) 262, 1614
AcyI GRCGYC 3 cut(s) 88, 522, 785
AfaI GTAC 4 cut(s) 25, 806, 983, 1486
AfiI CCNNNNNNNGG 5 cut(s) 195, 244, 322, 681, 1710
AhlI ACTAGT 1 cut(s) 20
AjiI CACGTC 2 cut(s) 835, 1465
AjnI CCWGG 2 cut(s) 155, 561
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AloI GAACNNNNNNTCC 2 cut(s) 1454, 1486
Alw21I GWGCWC 2 cut(s) 234, 674
Alw26I GTCTC 2 cut(s) 145, 697
AlwI GGATC 4 cut(s) 283, 296, 502, 885
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 4 cut(s) 146, 227, 370, 620
AoxI GGCC 4 cut(s) 468, 486, 1540, 1739
ApeKI GCWGC 7 cut(s) 306, 586, 772, 992, 1045, 1379, 1757
ApoI RAATTY 2 cut(s) 262, 1614
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
Asp700I GAANNNNTTC 1 cut(s) 629
AspLEI GCGC 6 cut(s) 201, 529, 577, 727, 997, 1194
AspS9I GGNCC 4 cut(s) 441, 559, 598, 1701
AsuC2I CCSGG 8 cut(s) 115, 196, 239, 303, 613, 621, 622, 1069
AsuHPI GGTGA 3 cut(s) 47, 1222, 1664
AsuII TTCGAA 1 cut(s) 459
AvaI CYCGRG 4 cut(s) 146, 227, 370, 620
AvaII GGWCC 4 cut(s) 441, 559, 598, 1701
BalI TGGCCA 2 cut(s) 470, 488
BamHI GGATCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 1495
BanII GRGCYC 4 cut(s) 234, 480, 620, 674
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 2 cut(s) 234, 674
BbvCI CCTCAGC 2 cut(s) 1005, 1317
BbvI GCAGC 7 cut(s) 318, 598, 784, 1004, 1032, 1366, 1769
BccI CCATC 5 cut(s) 69, 262, 460, 1512, 1559
BceAI ACGGC 7 cut(s) 256, 535, 728, 772, 787, 982, 1754
BcgI CGANNNNNNTGC 2 cut(s) 685, 719
BciT130I CCWGG 2 cut(s) 157, 563
BcnI CCSGG 8 cut(s) 115, 196, 239, 303, 613, 621, 622, 1069
BcoDI GTCTC 2 cut(s) 145, 697
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 39, 1380
BfoI RGCGCY 2 cut(s) 578, 998
BmcAI AGTACT 2 cut(s) 25, 983
Bme18I GGWCC 4 cut(s) 441, 559, 598, 1701
BmeT110I CYCGRG 4 cut(s) 146, 227, 370, 620
BmgBI CACGTC 2 cut(s) 835, 1465
BmgT120I GGNCC 4 cut(s) 441, 559, 598, 1701
BmiI GGNNCC 7 cut(s) 290, 610, 617, 626, 1066, 1497, 1640
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 6 cut(s) 573, 946, 1037, 1209, 1349, 1541
BmuI ACTGGG 1 cut(s) 311
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 783
BplI GAGNNNNNCTC 4 cut(s) 364, 396, 529, 561
Bpu10I CCTNAGC 2 cut(s) 1005, 1317
Bpu14I TTCGAA 1 cut(s) 459
BpuMI CCSGG 8 cut(s) 115, 196, 239, 303, 613, 621, 622, 1069
BsaBI GATNNNNATC 1 cut(s) 719
BsaHI GRCGYC 3 cut(s) 88, 522, 785
BsaJI CCNNGG 9 cut(s) 437, 536, 619, 620, 675, 998, 1068, 1458, 1736
BsaWI WCCGGW 1 cut(s) 291
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 244, 322, 681, 1710
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 2 cut(s) 317, 628
Bse8I GATNNNNATC 1 cut(s) 719
BseBI CCWGG 2 cut(s) 157, 563
BseDI CCNNGG 9 cut(s) 437, 536, 619, 620, 675, 998, 1068, 1458, 1736
BseGI GGATG 4 cut(s) 1249, 1523, 1527, 1570
BseJI GATNNNNATC 1 cut(s) 719
BseLI CCNNNNNNNGG 5 cut(s) 195, 244, 322, 681, 1710
BseMII CTCAG 7 cut(s) 872, 996, 1104, 1308, 1341, 1350, 1562
BseNI ACTGG 2 cut(s) 317, 628
BseRI GAGGAG 3 cut(s) 1031, 1130, 1540
BseXI GCAGC 7 cut(s) 318, 598, 784, 1004, 1032, 1366, 1769
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 5 cut(s) 201, 439, 527, 725, 1194
BshFI GGCC 4 cut(s) 470, 488, 1542, 1741
BshNI GGYRCC 1 cut(s) 1495
BsiHKAI GWGCWC 2 cut(s) 234, 674
BsiHKCI CYCGRG 4 cut(s) 146, 227, 370, 620
BslFI GGGAC 2 cut(s) 1123, 1263
BslI CCNNNNNNNGG 5 cut(s) 195, 244, 322, 681, 1710
BsmAI GTCTC 2 cut(s) 145, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 2 cut(s) 1123, 1263
BsmI GAATGC 1 cut(s) 1366
BsnI GGCC 4 cut(s) 470, 488, 1542, 1741
BsoBI CYCGRG 4 cut(s) 146, 227, 370, 620
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 4 cut(s) 234, 480, 620, 674
Bsp143I GATC 3 cut(s) 288, 507, 877
BspANI GGCC 4 cut(s) 470, 488, 1542, 1741
BspCNI CTCAG 7 cut(s) 873, 997, 1105, 1309, 1342, 1351, 1563
BspFNI CGCG 5 cut(s) 201, 439, 527, 725, 1194
BspHI TCATGA 1 cut(s) 894
BspLI GGNNCC 7 cut(s) 290, 610, 617, 626, 1066, 1497, 1640
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 4 cut(s) 283, 296, 502, 885
BspT104I TTCGAA 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 1495
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 2 cut(s) 317, 628
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 9 cut(s) 437, 536, 619, 620, 675, 998, 1068, 1458, 1736
BssMI GATC 3 cut(s) 288, 507, 877
BssNI GRCGYC 3 cut(s) 88, 522, 785
BssT1I CCWWGG 2 cut(s) 675, 1458
Bst2UI CCWGG 2 cut(s) 157, 563
Bst4CI ACNGT 4 cut(s) 350, 650, 710, 827
Bst6I CTCTTC 3 cut(s) 881, 1008, 1076
BstACI GRCGYC 3 cut(s) 88, 522, 785
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 5 cut(s) 472, 476, 573, 1266, 1623
BstDEI CTNAG 7 cut(s) 881, 1005, 1113, 1317, 1350, 1359, 1571
BstDSI CCRYGG 3 cut(s) 437, 998, 1736
BstENI CCTNNNNNAGG 1 cut(s) 1708
BstF5I GGATG 4 cut(s) 1249, 1523, 1527, 1570
BstFNI CGCG 5 cut(s) 201, 439, 527, 725, 1194
BstH2I RGCGCY 2 cut(s) 578, 998
BstHHI GCGC 6 cut(s) 201, 529, 577, 727, 997, 1194
BstKTI GATC 3 cut(s) 291, 510, 880
BstMAI GTCTC 2 cut(s) 145, 697
BstMBI GATC 3 cut(s) 288, 507, 877
BstMWI GCNNNNNNNGC 7 cut(s) 50, 127, 433, 436, 583, 1001, 1265
BstNI CCWGG 2 cut(s) 157, 563
BstNSI RCATGY 1 cut(s) 1160
BstPAI GACNNNNGTC 1 cut(s) 137
BstSFI CTRYAG 2 cut(s) 39, 1380
BstUI CGCG 5 cut(s) 201, 439, 527, 725, 1194
BstV1I GCAGC 7 cut(s) 318, 598, 784, 1004, 1032, 1366, 1769
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 3 cut(s) 288, 507, 877
BstYI RGATCY 3 cut(s) 288, 507, 877
BsuRI GGCC 4 cut(s) 470, 488, 1542, 1741
BtgI CCRYGG 3 cut(s) 437, 998, 1736
BtgZI GCGATG 2 cut(s) 706, 1014
BtrI CACGTC 2 cut(s) 835, 1465
BtsCI GGATG 4 cut(s) 1249, 1523, 1527, 1570
BtsIMutI CAGTG 1 cut(s) 655
Cac8I GCNNGC 5 cut(s) 472, 476, 573, 1266, 1623
CaiI CAGNNNCTG 1 cut(s) 577
CciI TCATGA 1 cut(s) 894
CfoI GCGC 6 cut(s) 201, 529, 577, 727, 997, 1194
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 4 cut(s) 441, 559, 598, 1701
Cfr42I CCGCGG 1 cut(s) 440
Cfr9I CCCGGG 1 cut(s) 620
CseI GACGC 4 cut(s) 96, 511, 679, 793
Csp6I GTAC 4 cut(s) 24, 805, 982, 1485
CviAII CATG 7 cut(s) 322, 550, 895, 1157, 1335, 1488, 1602
CviQI GTAC 4 cut(s) 24, 805, 982, 1485
DdeI CTNAG 7 cut(s) 881, 1005, 1113, 1317, 1350, 1359, 1571
DpnI GATC 3 cut(s) 290, 509, 879
DpnII GATC 3 cut(s) 288, 507, 877
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 3 cut(s) 468, 486, 1739
Eam1104I CTCTTC 3 cut(s) 881, 1008, 1076
EarI CTCTTC 3 cut(s) 881, 1008, 1076
EciI GGCGGA 3 cut(s) 219, 423, 1729
Ecl136II GAGCTC 2 cut(s) 232, 672
Eco130I CCWWGG 2 cut(s) 675, 1458
Eco147I AGGCCT 1 cut(s) 1542
Eco24I GRGCYC 4 cut(s) 234, 480, 620, 674
Eco47I GGWCC 4 cut(s) 441, 559, 598, 1701
Eco53kI GAGCTC 2 cut(s) 232, 672
Eco88I CYCGRG 4 cut(s) 146, 227, 370, 620
EcoICRI GAGCTC 2 cut(s) 232, 672
EcoNI CCTNNNNNAGG 1 cut(s) 1708
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 155, 561
EcoT14I CCWWGG 2 cut(s) 675, 1458
EcoT38I GRGCYC 4 cut(s) 234, 480, 620, 674
ErhI CCWWGG 2 cut(s) 675, 1458
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 7 cut(s) 325, 553, 898, 1160, 1338, 1491, 1605
FaqI GGGAC 2 cut(s) 1123, 1263
FatI CATG 7 cut(s) 321, 549, 894, 1156, 1334, 1487, 1601
FauI CCCGC 4 cut(s) 135, 397, 508, 582
FokI GGATG 4 cut(s) 1256, 1530, 1534, 1577
FriOI GRGCYC 4 cut(s) 234, 480, 620, 674
FspBI CTAG 1 cut(s) 21
GlaI GCGC 6 cut(s) 200, 528, 576, 726, 996, 1193
HaeII RGCGCY 2 cut(s) 578, 998
HaeIII GGCC 4 cut(s) 470, 488, 1542, 1741
HgaI GACGC 4 cut(s) 96, 511, 679, 793
HhaI GCGC 6 cut(s) 201, 529, 577, 727, 997, 1194
Hin1I GRCGYC 3 cut(s) 88, 522, 785
Hin1II CATG 7 cut(s) 325, 553, 898, 1160, 1338, 1491, 1605
Hin6I GCGC 6 cut(s) 199, 527, 575, 725, 995, 1192
HinP1I GCGC 6 cut(s) 199, 527, 575, 725, 995, 1192
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 5 cut(s) 359, 700, 715, 1361, 1419
HphI GGTGA 3 cut(s) 47, 1222, 1664
Hpy188I TCNGA 9 cut(s) 261, 598, 714, 757, 882, 1042, 1064, 1360, 1572
Hpy188III TCNNGA 8 cut(s) 184, 286, 694, 895, 1166, 1226, 1327, 1642
Hpy99I CGWCG 7 cut(s) 136, 277, 280, 283, 527, 787, 799
HpyAV CCTTC 7 cut(s) 892, 925, 1015, 1049, 1163, 1177, 1234
HpyCH4III ACNGT 4 cut(s) 350, 650, 710, 827
HpyCH4IV ACGT 4 cut(s) 665, 834, 906, 1464
HpyCH4V TGCA 6 cut(s) 586, 706, 1156, 1259, 1279, 1382
HpyF10VI GCNNNNNNNGC 7 cut(s) 50, 127, 433, 436, 583, 1001, 1265
HpyF3I CTNAG 7 cut(s) 881, 1005, 1113, 1317, 1350, 1359, 1571
HpySE526I ACGT 4 cut(s) 665, 834, 906, 1464
Hsp92I GRCGYC 3 cut(s) 88, 522, 785
Hsp92II CATG 7 cut(s) 325, 553, 898, 1160, 1338, 1491, 1605
HspAI GCGC 6 cut(s) 199, 527, 575, 725, 995, 1192
KspI CCGCGG 1 cut(s) 440
Kzo9I GATC 3 cut(s) 288, 507, 877
LmnI GCTCC 5 cut(s) 615, 677, 1042, 1064, 1723
Lsp1109I GCAGC 7 cut(s) 318, 598, 784, 1004, 1032, 1366, 1769
LweI GCATC 6 cut(s) 573, 946, 1037, 1209, 1349, 1541
MaeI CTAG 1 cut(s) 21
MaeII ACGT 4 cut(s) 665, 834, 906, 1464
MaeIII GTNAC 4 cut(s) 350, 650, 1210, 1408
MalI GATC 3 cut(s) 290, 509, 879
MboI GATC 3 cut(s) 288, 507, 877
MboII GAAGA 8 cut(s) 258, 783, 898, 1022, 1025, 1093, 1145, 1667
MfeI CAATTG 1 cut(s) 945
MflI RGATCY 3 cut(s) 288, 507, 877
MhlI GDGCHC 4 cut(s) 234, 480, 620, 674
MlsI TGGCCA 2 cut(s) 470, 488
MluCI AATT 8 cut(s) 190, 262, 945, 1273, 1557, 1581, 1614, 1749
MluNI TGGCCA 2 cut(s) 470, 488
MlyI GAGTC 3 cut(s) 709, 1370, 1413
MmeI TCCRAC 3 cut(s) 1020, 1042, 1074
Mox20I TGGCCA 2 cut(s) 470, 488
MroXI GAANNNNTTC 1 cut(s) 629
MscI TGGCCA 2 cut(s) 470, 488
MseI TTAA 2 cut(s) 1556, 1632
MslI CAYNNNNRTG 1 cut(s) 1392
Msp20I TGGCCA 2 cut(s) 470, 488
MspA1I CMGCKG 3 cut(s) 439, 589, 1447
MunI CAATTG 1 cut(s) 945
Mva1269I GAATGC 1 cut(s) 1366
MvaI CCWGG 2 cut(s) 157, 563
MvnI CGCG 5 cut(s) 201, 439, 527, 725, 1194
MwoI GCNNNNNNNGC 7 cut(s) 50, 127, 433, 436, 583, 1001, 1265
NciI CCSGG 8 cut(s) 115, 196, 239, 303, 613, 621, 622, 1069
NdeII GATC 3 cut(s) 288, 507, 877
NlaIII CATG 7 cut(s) 325, 553, 898, 1160, 1338, 1491, 1605
NlaIV GGNNCC 7 cut(s) 290, 610, 617, 626, 1066, 1497, 1640
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 3 cut(s) 350, 650, 1210
NspI RCATGY 1 cut(s) 1160
NspV TTCGAA 1 cut(s) 459
PaeR7I CTCGAG 2 cut(s) 227, 370
PagI TCATGA 1 cut(s) 894
PceI AGGCCT 1 cut(s) 1542
PcsI WCGNNNNNNNCGW 7 cut(s) 275, 354, 368, 687, 791, 800, 1744
PctI GAATGC 1 cut(s) 1366
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 359, 715
PflFI GACNNNGTC 1 cut(s) 787
PfoI TCCNGGA 2 cut(s) 561, 611
PleI GAGTC 3 cut(s) 708, 1369, 1413
PpsI GAGTC 3 cut(s) 708, 1369, 1413
PshAI GACNNNNGTC 1 cut(s) 137
Psp124BI GAGCTC 2 cut(s) 234, 674
Psp6I CCWGG 2 cut(s) 155, 561
PspGI CCWGG 2 cut(s) 155, 561
PspN4I GGNNCC 7 cut(s) 290, 610, 617, 626, 1066, 1497, 1640
PspPI GGNCC 4 cut(s) 441, 559, 598, 1701
PspXI VCTCGAGB 2 cut(s) 227, 370
PstI CTGCAG 1 cut(s) 1384
PstNI CAGNNNCTG 1 cut(s) 577
PsuI RGATCY 3 cut(s) 288, 507, 877
PsyI GACNNNGTC 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 1447
RsaI GTAC 4 cut(s) 25, 806, 983, 1486
RsaNI GTAC 4 cut(s) 24, 805, 982, 1485
RseI CAYNNNNRTG 1 cut(s) 1392
SacI GAGCTC 2 cut(s) 234, 674
SacII CCGCGG 1 cut(s) 440
SaqAI TTAA 2 cut(s) 1556, 1632
Sau3AI GATC 3 cut(s) 288, 507, 877
Sau96I GGNCC 4 cut(s) 441, 559, 598, 1701
ScaI AGTACT 2 cut(s) 25, 983
SchI GAGTC 3 cut(s) 709, 1370, 1413
SduI GDGCHC 4 cut(s) 234, 480, 620, 674
SfaNI GCATC 6 cut(s) 573, 946, 1037, 1209, 1349, 1541
SfcI CTRYAG 2 cut(s) 39, 1380
Sfr274I CTCGAG 2 cut(s) 227, 370
Sfr303I CCGCGG 1 cut(s) 440
SfuI TTCGAA 1 cut(s) 459
SgrBI CCGCGG 1 cut(s) 440
SinI GGWCC 4 cut(s) 441, 559, 598, 1701
SlaI CTCGAG 2 cut(s) 227, 370
SmaI CCCGGG 1 cut(s) 622
SmiMI CAYNNNNRTG 1 cut(s) 1392
SmlI CTYRAG 2 cut(s) 227, 370
SmoI CTYRAG 2 cut(s) 227, 370
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 8 cut(s) 190, 262, 945, 1273, 1557, 1581, 1614, 1749
SseBI AGGCCT 1 cut(s) 1542
SspMI CTAG 1 cut(s) 21
SstI GAGCTC 2 cut(s) 234, 674
StuI AGGCCT 1 cut(s) 1542
StyI CCWWGG 2 cut(s) 675, 1458
TaaI ACNGT 4 cut(s) 350, 650, 710, 827
TaiI ACGT 4 cut(s) 668, 837, 909, 1467
TaqI TCGA 7 cut(s) 123, 228, 234, 371, 459, 695, 1417
TasI AATT 8 cut(s) 190, 262, 945, 1273, 1557, 1581, 1614, 1749
TatI WGTACW 2 cut(s) 23, 981
TauI GCSGC 9 cut(s) 93, 204, 430, 439, 532, 535, 802, 944, 1051
TfiI GAWTC 2 cut(s) 359, 715
Tru1I TTAA 2 cut(s) 1556, 1632
Tru9I TTAA 2 cut(s) 1556, 1632
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 3 cut(s) 350, 650, 1210
TseI GCWGC 7 cut(s) 306, 586, 772, 992, 1045, 1379, 1757
Tsp45I GTSAC 3 cut(s) 350, 650, 1210
TspDTI ATGAA 4 cut(s) 911, 1146, 1214, 1376
TspMI CCCGGG 1 cut(s) 620
TspRI CASTG 1 cut(s) 655
Tth111I GACNNNGTC 1 cut(s) 787
VpaK11BI GGWCC 4 cut(s) 441, 559, 598, 1701
XagI CCTNNNNNAGG 1 cut(s) 1708
XapI RAATTY 2 cut(s) 262, 1614
XceI RCATGY 1 cut(s) 1160
XhoI CTCGAG 2 cut(s) 227, 370
XmaI CCCGGG 1 cut(s) 620
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 1 cut(s) 21
ZrmI AGTACT 2 cut(s) 25, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.