Rorug07G0037000

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000334
Physical Location & Seq
Reverse (-)
2605800 .. 2608510
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0037000.1

Sequence Viewer

Length: 750 bp
ATGGGTTCCAAGGATCCTGCTCCGGTGGTTGACAAGGTTAATGAGGCAACGCAGGCGGTGGATCGGGCTTGTCCTGGCAAAAAGATTCAGGGGAAAATGCCTAAGAGAATCCACAAGGCTGTGAGGGAGAAACAGAAGCGTGAGCATTTGAATGATCTTTTTCTCGATCTGTCTGATGCTCTCGAACTGAATCAGCAGAACACTGGAAAGGCCACTATACTTTGTGAAGCTACTCGACTATTAAAGGATTTGCTTGGTCAAATCGAATCCTTGAGAAACGAGAATGTATCCTTGTTGTCCGAATCTAACTATATGACTGTTGAGAAGAATGAGCTCCGAGAGGATACTTCTGCCTTAGAAACTCAGATTGAAAGATTGCAAAGTGAGCTACAAGAGCGGGTTCGCCAGTCTAAACCTGACCTTAATGTACCACCTGTAGAAGTTAGACAAGAAGTGGCATCCCATTTTCCTGGAAATTGTGTCGGATTTCCTGCTCAAGAATCAGCTTTGCAACAAGCACCTGCTGTCTTTGTCATGCCCCTCCACCCTGATCTCCAAACTTATCCACCGGCAGATTCCGCCCACCTCACATCTAAGACCAACTCAAATGTGAGCAAACCACATCCTAGGTATCCAACCTCGGTGGATTCTTGGCCATTTCAACTTCTCAGTGAGCAACCAGCAGCAGGCAAAGACTCTCGACAGAATGGTCACAGTACCAGCGGATATAATGGCCATGATAACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB

Protein Analysis

249

Amino Acids

27.66

Weight (kDa)

6.08

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH_IRO3 PF23177 32 - 109 7.5e-26 Iron-related transcription factor 3 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
AasI GACNNNNNNGTC 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 397
AciI CCGC 4 cut(s) 56, 397, 579, 723
AclWI GGATC 3 cut(s) 8, 21, 69
AcoI YGGCCR 2 cut(s) 653, 733
AfaI GTAC 2 cut(s) 429, 718
AfiI CCNNNNNNNGG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 3 cut(s) 151, 371, 662
AjnI CCWGG 2 cut(s) 73, 469
AluBI AGCT 4 cut(s) 230, 334, 388, 506
AluI AGCT 4 cut(s) 230, 334, 388, 506
Alw21I GWGCWC 1 cut(s) 336
AlwI GGATC 3 cut(s) 8, 21, 69
AoxI GGCC 3 cut(s) 210, 653, 733
ApeKI GCWGC 1 cut(s) 683
AspA2I CCTAGG 1 cut(s) 626
AvrII CCTAGG 1 cut(s) 626
BalI TGGCCA 2 cut(s) 655, 735
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 1 cut(s) 695
BciT130I CCWGG 2 cut(s) 75, 471
BciVI GTATCC 3 cut(s) 298, 337, 642
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 529
BfuI GTATCC 3 cut(s) 298, 337, 642
BisI GCNGC 1 cut(s) 684
BlnI CCTAGG 1 cut(s) 626
BlsI GCNGC 1 cut(s) 685
Bme1390I CCNGG 2 cut(s) 75, 471
BmiI GGNNCC 2 cut(s) 7, 15
BmrFI CCNGG 2 cut(s) 75, 471
BmsI GCATC 2 cut(s) 166, 467
BpuEI CTTGAG 2 cut(s) 292, 480
BsaJI CCNNGG 3 cut(s) 9, 626, 639
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 686
Bse118I RCCGGY 1 cut(s) 568
Bse1I ACTGG 2 cut(s) 208, 406
BseBI CCWGG 2 cut(s) 75, 471
BseDI CCNNGG 3 cut(s) 9, 626, 639
BseGI GGATG 2 cut(s) 458, 622
BseLI CCNNNNNNNGG 1 cut(s) 686
BseMII CTCAG 2 cut(s) 377, 682
BseNI ACTGG 2 cut(s) 208, 406
BseXI GCAGC 1 cut(s) 695
BshFI GGCC 3 cut(s) 212, 655, 735
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 23, 569
BslI CCNNNNNNNGG 1 cut(s) 686
BsnI GGCC 3 cut(s) 212, 655, 735
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 5 cut(s) 13, 61, 154, 166, 550
BspACI CCGC 4 cut(s) 56, 397, 579, 723
BspANI GGCC 3 cut(s) 212, 655, 735
BspCNI CTCAG 2 cut(s) 376, 681
BspLI GGNNCC 2 cut(s) 7, 15
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 3 cut(s) 8, 21, 69
BsrBI CCGCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 568
BsrI ACTGG 2 cut(s) 208, 406
BssAI RCCGGY 1 cut(s) 568
BssECI CCNNGG 3 cut(s) 9, 626, 639
BssMI GATC 5 cut(s) 13, 61, 154, 166, 550
BssT1I CCWWGG 2 cut(s) 9, 626
Bst2UI CCWGG 2 cut(s) 75, 471
Bst4CI ACNGT 2 cut(s) 319, 716
BstC8I GCNNGC 2 cut(s) 54, 688
BstDEI CTNAG 5 cut(s) 102, 355, 363, 594, 668
BstF5I GGATG 2 cut(s) 458, 622
BstKTI GATC 5 cut(s) 16, 64, 157, 169, 553
BstMBI GATC 5 cut(s) 13, 61, 154, 166, 550
BstMWI GCNNNNNNNGC 4 cut(s) 53, 385, 394, 578
BstNI CCWGG 2 cut(s) 75, 471
BstSCI CCNGG 2 cut(s) 73, 469
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 695
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 13
BsuI GTATCC 3 cut(s) 298, 337, 642
BsuRI GGCC 3 cut(s) 212, 655, 735
BtsCI GGATG 2 cut(s) 458, 622
BtsIMutI CAGTG 2 cut(s) 201, 676
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 54, 688
Cfr10I RCCGGY 1 cut(s) 568
Csp6I GTAC 2 cut(s) 428, 717
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviAII CATG 2 cut(s) 535, 737
CviJI RGCY 9 cut(s) 68, 119, 212, 230, 334, 388, 506, 655, 735
CviKI_1 RGCY 9 cut(s) 68, 119, 212, 230, 334, 388, 506, 655, 735
CviQI GTAC 2 cut(s) 428, 717
DdeI CTNAG 5 cut(s) 102, 355, 363, 594, 668
DpnI GATC 5 cut(s) 15, 63, 156, 168, 552
DpnII GATC 5 cut(s) 13, 61, 154, 166, 550
DrdI GACNNNNNNGTC 1 cut(s) 708
DseDI GACNNNNNNGTC 1 cut(s) 708
EaeI YGGCCR 2 cut(s) 653, 733
EciI GGCGGA 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 2 cut(s) 9, 626
Eco24I GRGCYC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 73, 469
EcoT14I CCWWGG 2 cut(s) 9, 626
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 2 cut(s) 9, 626
FaeI CATG 2 cut(s) 538, 740
FaiI YATR 6 cut(s) 218, 312, 314, 536, 729, 738
FatI CATG 2 cut(s) 534, 736
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 2 cut(s) 445, 609
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 684
FspBI CTAG 1 cut(s) 627
GluI GCNGC 1 cut(s) 684
HaeIII GGCC 3 cut(s) 212, 655, 735
HapII CCGG 2 cut(s) 23, 569
Hin1II CATG 2 cut(s) 538, 740
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 9 cut(s) 85, 108, 190, 266, 302, 500, 575, 647, 695
HpaII CCGG 2 cut(s) 23, 569
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 5 cut(s) 175, 301, 338, 366, 485
Hpy188III TCNNGA 4 cut(s) 164, 182, 497, 699
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 319, 716
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 2 cut(s) 379, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 385, 394, 578
HpyF3I CTNAG 5 cut(s) 102, 355, 363, 594, 668
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 2 cut(s) 538, 740
Kzo9I GATC 5 cut(s) 13, 61, 154, 166, 550
LmnI GCTCC 2 cut(s) 25, 339
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 2 cut(s) 166, 467
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 1 cut(s) 710
MalI GATC 5 cut(s) 15, 63, 156, 168, 552
MbiI CCGCTC 1 cut(s) 397
MboI GATC 5 cut(s) 13, 61, 154, 166, 550
MboII GAAGA 1 cut(s) 337
MflI RGATCY 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 2 cut(s) 655, 735
MluCI AATT 1 cut(s) 475
MluNI TGGCCA 2 cut(s) 655, 735
MlyI GAGTC 1 cut(s) 689
MmeI TCCRAC 2 cut(s) 463, 659
MnlI CCTC 6 cut(s) 37, 117, 334, 551, 596, 649
Mox20I TGGCCA 2 cut(s) 655, 735
MscI TGGCCA 2 cut(s) 655, 735
MseI TTAA 3 cut(s) 39, 242, 423
MslI CAYNNNNRTG 1 cut(s) 150
Msp20I TGGCCA 2 cut(s) 655, 735
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 2 cut(s) 23, 569
MspR9I CCNGG 2 cut(s) 75, 471
MvaI CCWGG 2 cut(s) 75, 471
MwoI GCNNNNNNNGC 4 cut(s) 53, 385, 394, 578
NdeII GATC 5 cut(s) 13, 61, 154, 166, 550
NlaIII CATG 2 cut(s) 538, 740
NlaIV GGNNCC 2 cut(s) 7, 15
NmuCI GTSAC 1 cut(s) 710
PaqCI CACCTGC 1 cut(s) 529
PfeI GAWTC 8 cut(s) 85, 108, 190, 266, 302, 500, 575, 647
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 1 cut(s) 685
PleI GAGTC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 73, 469
PspGI CCWGG 2 cut(s) 73, 469
PspN4I GGNNCC 2 cut(s) 7, 15
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 2 cut(s) 429, 718
RsaNI GTAC 2 cut(s) 428, 717
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 39, 242, 423
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 5 cut(s) 13, 61, 154, 166, 550
SchI GAGTC 1 cut(s) 689
ScrFI CCNGG 2 cut(s) 75, 471
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 2 cut(s) 166, 467
SfcI CTRYAG 1 cut(s) 435
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 271, 495
SmoI CTYRAG 2 cut(s) 271, 495
Sse9I AATT 1 cut(s) 475
SsiI CCGC 4 cut(s) 56, 397, 579, 723
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 73, 469
StyI CCWWGG 2 cut(s) 9, 626
TaaI ACNGT 2 cut(s) 319, 716
TaiI ACGT 1 cut(s) 747
TaqI TCGA 5 cut(s) 165, 183, 235, 264, 700
TasI AATT 1 cut(s) 475
TfiI GAWTC 8 cut(s) 85, 108, 190, 266, 302, 500, 575, 647
Tru1I TTAA 3 cut(s) 39, 242, 423
Tru9I TTAA 3 cut(s) 39, 242, 423
TscAI CASTG 2 cut(s) 208, 676
TseFI GTSAC 1 cut(s) 710
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 710
TspRI CASTG 2 cut(s) 208, 676
XmaJI CCTAGG 1 cut(s) 626
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.