FvH4_5g34303

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000334
Physical Location & Seq
Reverse (-)
24986260 .. 24986715
456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34303.t1

Sequence Viewer

Length: 288 bp
ATGGCTTTGACTGTGTCCAGCAACAACAAAATGAACATGTTCCTCAAGGTGGCTCTTGTGCTCTGTCTTTTTCTCGTCATCTCCTCCGTTGAGAGCAGAAAACTCATCAGCAGTGGGGATGGCAAGCCCGCGTGTGACACAGTTTATGGGATAAAACCTACAAATCAGTGCAGTGGTATCATGCAGGCGTTCGATCTGAGTGCTGATGAGTTCTTCGCAATCAATCCTAATCTCAATTGCAATGCTATCTTTGTTGGACAATGGATTTGTATTAGTGGATCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

96

Amino Acids

10.18

Weight (kDa)

6.01

Isoelectric Point (pI)

21.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 1 cut(s) 286
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp700I GAANNNNTTC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 63
BccI CCATC 1 cut(s) 113
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BpuEI CTTGAG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 73
BsgI GTGCAG 1 cut(s) 190
Bsh1236I CGCG 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 193, 278
BspACI CCGC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 1 cut(s) 131
BspPI GGATC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 247
BssMI GATC 2 cut(s) 193, 278
Bst4CI ACNGT 2 cut(s) 13, 142
BstC8I GCNNGC 3 cut(s) 125, 129, 186
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 131
BstKTI GATC 2 cut(s) 196, 281
BstMBI GATC 2 cut(s) 193, 278
BstNSI RCATGY 1 cut(s) 40
BstUI CGCG 1 cut(s) 131
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 2 cut(s) 118, 178
BtsIMutI CAGTG 3 cut(s) 118, 173, 178
Cac8I GCNNGC 3 cut(s) 125, 129, 186
CviAII CATG 2 cut(s) 37, 181
CviJI RGCY 3 cut(s) 5, 53, 127
CviKI_1 RGCY 3 cut(s) 5, 53, 127
DdeI CTNAG 1 cut(s) 197
DpnI GATC 2 cut(s) 195, 280
DpnII GATC 2 cut(s) 193, 278
FaeI CATG 2 cut(s) 40, 184
FaiI YATR 4 cut(s) 38, 147, 182, 286
FatI CATG 2 cut(s) 36, 180
FauI CCCGC 1 cut(s) 136
FokI GGATG 1 cut(s) 131
Hin1II CATG 2 cut(s) 40, 184
Hpy188I TCNGA 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 13, 142
HpyCH4V TGCA 4 cut(s) 171, 184, 240, 284
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 2 cut(s) 40, 184
Kzo9I GATC 2 cut(s) 193, 278
LpnPI CCDG 2 cut(s) 31, 170
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 195, 280
MboI GATC 2 cut(s) 193, 278
MboII GAAGA 1 cut(s) 205
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 53, 94
MroXI GAANNNNTTC 1 cut(s) 38
MunI CAATTG 1 cut(s) 235
MvnI CGCG 1 cut(s) 131
NdeII GATC 2 cut(s) 193, 278
NlaIII CATG 2 cut(s) 40, 184
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 13
PscI ACATGT 1 cut(s) 36
PsuI RGATCY 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 193, 278
SduI GDGCHC 1 cut(s) 63
SetI ASST 2 cut(s) 51, 160
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 235
SsiI CCGC 1 cut(s) 129
TaaI ACNGT 2 cut(s) 13, 142
TaqI TCGA 1 cut(s) 192
TasI AATT 1 cut(s) 235
TscAI CASTG 3 cut(s) 118, 173, 178
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 3 cut(s) 118, 173, 178
Tth111I GACNNNGTC 1 cut(s) 13
XceI RCATGY 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.