Prupe.3G230300_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000334
Physical Location & Seq
Forward (+)
22799164 .. 22799822
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230300.1

Sequence Viewer

Length: 267 bp
ATGAACCATTTGAACAGAGTTTGGATGGCGGCGAGCGTGGTCGTGGTGCAGGGCCCTGCCGACCAGGGGCCTAAGTGGACATCCGGTCTTAAATCCTTCCAGCTAAGCAGGAGGAGATGCTTGGGTGGTGCCGGGGACGCTTCGGATCTCCGCCCATTGTCCGGCGCAGTCGGGTCGGGTTTCTCCCAAGTTTGTGAGGAGAGACGGAACCAGGCCGACGAGTCTATCCAAAAAGTCATGTACTTGAACTGCTGGGGTCAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

89

Amino Acids

9.55

Weight (kDa)

9.05

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 2 cut(s) 29, 151
AclWI GGATC 1 cut(s) 153
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 66, 161
AgsI TTSAA 2 cut(s) 13, 247
AhdI GACNNNNNGTC 1 cut(s) 84
AjnI CCWGG 2 cut(s) 63, 210
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 153
AoxI GGCC 3 cut(s) 52, 68, 213
ApaI GGGCCC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 52, 53, 68
AsuC2I CCSGG 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 56
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 156, 190
BciT130I CCWGG 2 cut(s) 65, 212
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 196
BisI GCNGC 1 cut(s) 30
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 65, 133, 212
BmeRI GACNNNNNGTC 1 cut(s) 84
BmgT120I GGNCC 3 cut(s) 52, 53, 68
BmiI GGNNCC 4 cut(s) 54, 69, 130, 209
BmrFI CCNGG 3 cut(s) 65, 133, 212
BmsI GCATC 1 cut(s) 107
Bpu1102I GCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 64, 132
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 161
BseBI CCWGG 2 cut(s) 65, 212
BseDI CCNNGG 2 cut(s) 64, 132
BseGI GGATG 2 cut(s) 30, 80
BseLI CCNNNNNNNGG 2 cut(s) 66, 161
BseRI GAGGAG 2 cut(s) 127, 212
BseSI GKGCMC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 68
BshFI GGCC 3 cut(s) 54, 70, 215
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 3 cut(s) 84, 132, 162
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 66, 161
BsmAI GTCTC 1 cut(s) 196
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 54, 70, 215
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 1 cut(s) 145
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 2 cut(s) 29, 151
BspANI GGCC 3 cut(s) 54, 70, 215
BspLI GGNNCC 4 cut(s) 54, 69, 130, 209
BspPI GGATC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 64, 132
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 65, 212
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 2 cut(s) 72, 104
BstF5I GGATG 2 cut(s) 30, 80
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 2 cut(s) 65, 212
BstSCI CCNGG 3 cut(s) 63, 131, 210
BstSLI GKGCMC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 3 cut(s) 54, 70, 215
BtsCI GGATG 2 cut(s) 30, 80
Cac8I GCNNGC 1 cut(s) 34
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 52, 53, 68
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 241
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 54, 70, 103, 215, 264
CviKI_1 RGCY 5 cut(s) 54, 70, 103, 215, 264
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 72, 104
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 84
Eam1105I GACNNNNNGTC 1 cut(s) 84
EciI GGCGGA 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 56
EcoO109I RGGNCCY 3 cut(s) 52, 53, 68
EcoRII CCWGG 2 cut(s) 63, 210
EcoT38I GRGCYC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 1 cut(s) 241
FaiI YATR 1 cut(s) 239
FaqI GGGAC 1 cut(s) 149
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 2 cut(s) 37, 67
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 30
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 30
GsaI CCCAGC 1 cut(s) 256
HaeIII GGCC 3 cut(s) 54, 70, 215
HapII CCGG 3 cut(s) 84, 132, 162
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 167
Hin1II CATG 1 cut(s) 241
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HinfI GANTC 1 cut(s) 221
HpaII CCGG 3 cut(s) 84, 132, 162
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 145
Hpy8I GTNNAC 1 cut(s) 78
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 72, 104
Hsp92II CATG 1 cut(s) 241
HspAI GCGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 145
LweI GCATC 1 cut(s) 107
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 56
MlyI GAGTC 1 cut(s) 230
MnlI CCTC 2 cut(s) 105, 190
MseI TTAA 1 cut(s) 90
MspI CCGG 3 cut(s) 84, 132, 162
MspR9I CCNGG 3 cut(s) 65, 133, 212
MvaI CCWGG 2 cut(s) 65, 212
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 133
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 241
NlaIV GGNNCC 4 cut(s) 54, 69, 130, 209
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 63, 210
PspFI CCCAGC 1 cut(s) 252
PspGI CCWGG 2 cut(s) 63, 210
PspN4I GGNNCC 4 cut(s) 54, 69, 130, 209
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 52, 53, 68
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 145
Sau96I GGNCC 3 cut(s) 52, 53, 68
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 65, 133, 212
SduI GDGCHC 1 cut(s) 56
SetI ASST 1 cut(s) 105
SfaNI GCATC 1 cut(s) 107
SsiI CCGC 2 cut(s) 29, 151
StyD4I CCNGG 3 cut(s) 63, 131, 210
TatI WGTACW 1 cut(s) 240
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.