RLG00000021295

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000334
Physical Location & Seq
Forward (+)
73914787 .. 73916640
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021295

Sequence Viewer

Length: 504 bp
ATGGCTAGGCCTAGCTTGATTCTACTTCTAGTTGTCTCTCTTCTTGTCATAATTTCAGTAGCTGAGAGTAAACGACTAGCTGTTGGATTTGCAGGGAAGAAGGCTTCAAACCTGATTTGTAATGACATTTATGGTGCAGAGGAAGGTGATACTTGCAGTCTTGTTGCTGAAATGTTCAACCTGAGTCTCGATTTCTTCCTTGCCATCAACCCTAATATCAATTGCGACAACTTCTTTGTGGGTCAATGGCTTTGCGTTGATGGTGCTCAGAACTCCCTTCCTTCCTCCCTTAATTTTGAATTGAGCTCCCGATTTTCGTCGTTGATGTACAGCTTTCTGCCTTCCTCCTTTGATTTCGAATTGAGATCCCGATCTTCATCGTCTACGGCTTCAACGCCGTCAATGTCACAGAAGCCGGCGATGGAAGGCTTGTCGTGCTTGTTCTCGTCTCTGGCGGTGAAGTATGCTTCGTCCTCTTCGAACTTTTTGGGTGAAGGAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

168

Amino Acids

17.96

Weight (kDa)

4.64

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 48 - 86 1.7e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 383
AciI CCGC 1 cut(s) 455
AclWI GGATC 1 cut(s) 360
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 4 cut(s) 108, 178, 299, 393
AluBI AGCT 5 cut(s) 15, 62, 80, 306, 333
AluI AGCT 5 cut(s) 15, 62, 80, 306, 333
Alw21I GWGCWC 2 cut(s) 268, 308
Alw26I GTCTC 3 cut(s) 40, 191, 453
AlwI GGATC 1 cut(s) 360
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AsuHPI GGTGA 3 cut(s) 158, 469, 503
AsuII TTCGAA 2 cut(s) 357, 479
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 268, 308
BccI CCATC 3 cut(s) 212, 254, 415
BceAI ACGGC 2 cut(s) 382, 402
BcoDI GTCTC 3 cut(s) 40, 191, 453
BfaI CTAG 4 cut(s) 6, 12, 29, 77
Bpu14I TTCGAA 2 cut(s) 357, 479
BsaBI GATNNNNATC 2 cut(s) 370, 376
Bse118I RCCGGY 1 cut(s) 415
Bse8I GATNNNNATC 2 cut(s) 370, 376
BseJI GATNNNNATC 2 cut(s) 370, 376
BseMII CTCAG 3 cut(s) 54, 173, 281
BsgI GTGCAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 2 cut(s) 268, 308
BsiSI CCGG 1 cut(s) 416
BsmAI GTCTC 3 cut(s) 40, 191, 453
BsmBI CGTCTC 1 cut(s) 453
BsnI GGCC 1 cut(s) 10
Bsp119I TTCGAA 2 cut(s) 357, 479
Bsp1286I GDGCHC 2 cut(s) 268, 308
Bsp1407I TGTACA 1 cut(s) 327
Bsp143I GATC 2 cut(s) 365, 371
BspACI CCGC 1 cut(s) 455
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 3 cut(s) 55, 174, 280
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 2 cut(s) 357, 479
BsrFI RCCGGY 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 415
BssMI GATC 2 cut(s) 365, 371
Bst6I CTCTTC 2 cut(s) 45, 481
BstAUI TGTACA 1 cut(s) 327
BstBI TTCGAA 2 cut(s) 357, 479
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 3 cut(s) 63, 182, 267
BstKTI GATC 2 cut(s) 368, 374
BstMAI GTCTC 3 cut(s) 40, 191, 453
BstMBI GATC 2 cut(s) 365, 371
BstMWI GCNNNNNNNGC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuRI GGCC 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 417
CaiI CAGNNNCTG 1 cut(s) 62
Cfr10I RCCGGY 1 cut(s) 415
Csp6I GTAC 1 cut(s) 328
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 3 cut(s) 63, 182, 267
DpnI GATC 2 cut(s) 367, 373
DpnII GATC 2 cut(s) 365, 371
Eam1104I CTCTTC 2 cut(s) 45, 481
EarI CTCTTC 2 cut(s) 45, 481
Ecl136II GAGCTC 1 cut(s) 306
Eco147I AGGCCT 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 453
FaiI YATR 3 cut(s) 50, 132, 465
FblI GTMKAC 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 4 cut(s) 6, 12, 29, 77
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 416
HinfI GANTC 2 cut(s) 19, 184
HpaII CCGG 1 cut(s) 416
HphI GGTGA 3 cut(s) 158, 469, 503
Hpy166II GTNNAC 2 cut(s) 71, 384
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 3 cut(s) 188, 309, 369
Hpy8I GTNNAC 2 cut(s) 71, 384
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 7 cut(s) 94, 137, 287, 291, 351, 419, 488
HpyCH4V TGCA 3 cut(s) 92, 137, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 435
HpyF3I CTNAG 3 cut(s) 63, 182, 267
KroI GCCGGC 1 cut(s) 415
KroNI GCCGGC 1 cut(s) 417
Kzo9I GATC 2 cut(s) 365, 371
LmnI GCTCC 1 cut(s) 311
LpnPI CCDG 5 cut(s) 78, 125, 194, 429, 437
MaeI CTAG 4 cut(s) 6, 12, 29, 77
MaeIII GTNAC 1 cut(s) 405
MalI GATC 2 cut(s) 367, 373
MboI GATC 2 cut(s) 365, 371
MboII GAAGA 5 cut(s) 32, 109, 187, 366, 468
MfeI CAATTG 1 cut(s) 220
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 2 cut(s) 268, 308
MluCI AATT 5 cut(s) 51, 220, 292, 299, 359
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 133, 295, 355, 484
MroNI GCCGGC 1 cut(s) 415
MseI TTAA 1 cut(s) 291
MspI CCGG 1 cut(s) 416
MunI CAATTG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 435
NaeI GCCGGC 1 cut(s) 417
NdeII GATC 2 cut(s) 365, 371
NgoMIV GCCGGC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 405
NspV TTCGAA 2 cut(s) 357, 479
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Psp124BI GAGCTC 1 cut(s) 308
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacI GAGCTC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 2 cut(s) 365, 371
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 2 cut(s) 268, 308
SetI ASST 8 cut(s) 17, 64, 82, 114, 148, 183, 308, 335
SfuI TTCGAA 2 cut(s) 357, 479
Sse9I AATT 5 cut(s) 51, 220, 292, 299, 359
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 455
SspMI CTAG 4 cut(s) 6, 12, 29, 77
SstI GAGCTC 1 cut(s) 308
StuI AGGCCT 1 cut(s) 10
TaqI TCGA 3 cut(s) 189, 357, 479
TasI AATT 5 cut(s) 51, 220, 292, 299, 359
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 405
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 6, 12, 29, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.