Rmu_sc0000039.1_g000008

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000039.1
OG0000334
Physical Location & Seq
Forward (+)
63837 .. 68114
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000039.1_g000008.1.cds

Sequence Viewer

Length: 234 bp
atgcattacacagtggtgagcaccaccggcgccatcggcaagctcaacgaggtcgagatcgagtctggcgaggtcttgtaccccggcctcagtaaagaggaaggtgatacttgcactagtgtcgctcaaacgttcaaactgagtctcgatgccttcctttccattaaccctaatatcaattgcgacagcttctttgtgggtcaatggctctgtattgatggtgctccgaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

77

Amino Acids

8.3

Weight (kDa)

4.31

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AclI AACGTT 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 80
AgsI TTSAA 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 43, 189
AluI AGCT 2 cut(s) 43, 189
Alw21I GWGCWC 2 cut(s) 23, 226
Alw26I GTCTC 1 cut(s) 149
AoxI GGCC 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 28, 116
BanI GGYRCC 1 cut(s) 29
Bbv12I GWGCWC 2 cut(s) 23, 226
BccI CCATC 2 cut(s) 41, 212
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 103, 131
BshFI GGCC 1 cut(s) 87
BshNI GGYRCC 1 cut(s) 29
BsiHKAI GWGCWC 2 cut(s) 23, 226
BsiSI CCGG 2 cut(s) 27, 84
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 87
Bsp1286I GDGCHC 2 cut(s) 23, 226
Bsp143I GATC 1 cut(s) 57
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 102, 132
BspLI GGNNCC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 13
BstACI GRCGYC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 89, 140
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 27, 36
BstSCI CCNGG 1 cut(s) 82
BsuRI GGCC 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 1 cut(s) 79
CviJI RGCY 4 cut(s) 43, 87, 189, 208
CviKI_1 RGCY 4 cut(s) 43, 87, 189, 208
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 89, 140
DinI GGCGCC 1 cut(s) 31
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
FspBI CTAG 1 cut(s) 117
GlaI GCGC 1 cut(s) 31
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 27, 84
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 30
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 2 cut(s) 62, 142
HpaII CCGG 2 cut(s) 27, 84
HphI GGTGA 2 cut(s) 28, 116
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 55, 146
HpyAV CCTTC 2 cut(s) 95, 163
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 2 cut(s) 4, 114
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 36
HpyF3I CTNAG 2 cut(s) 89, 140
HpySE526I ACGT 1 cut(s) 131
Hsp92I GRCGYC 1 cut(s) 30
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 3 cut(s) 40, 51, 97
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 131
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MfeI CAATTG 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 23, 226
MluCI AATT 1 cut(s) 178
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 71, 151
MnlI CCTC 4 cut(s) 43, 64, 91, 98
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 165
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 2 cut(s) 27, 84
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 27, 36
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 14
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PleI GAGTC 2 cut(s) 70, 150
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 2 cut(s) 70, 150
Psp1406I AACGTT 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 165
Sau3AI GATC 1 cut(s) 57
SchI GAGTC 2 cut(s) 71, 151
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 2 cut(s) 23, 226
SetI ASST 6 cut(s) 45, 54, 75, 106, 134, 191
SfaNI GCATC 1 cut(s) 139
SfoI GGCGCC 1 cut(s) 31
SgrAI CRCCGGYG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 14
SpeI ACTAGT 1 cut(s) 116
Sse9I AATT 1 cut(s) 178
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 134
TaqI TCGA 3 cut(s) 54, 60, 147
TasI AATT 1 cut(s) 178
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 1 cut(s) 18
TspRI CASTG 1 cut(s) 18
XspI CTAG 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.