Rmu_sc0042097.1_g000001

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042097.1
OG0000334
Physical Location & Seq
Forward (+)
754 .. 1117
364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042097.1_g000001.1.cds

Sequence Viewer

Length: 267 bp
atggctcttgcaatgcctaacaacaaagtggccatgcttctcgcgctctgtctttttctcatcatctcctcctctgaaagcagacaactcgctgggaatggcaaaccgagctgcgacgctgtttatgcggtacaacctgatgatacttgcgcaagcgtgattgaggatttcggtctggattctgaccacttcttttcaatcaatcccaacatcaactgcgacgctatctttatcgatcaatggctttgtgtcgagggctcagcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

88

Amino Acids

9.46

Weight (kDa)

4.05

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 151
AccII CGCG 1 cut(s) 44
AciI CCGC 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 132
AgsI TTSAA 1 cut(s) 198
AluBI AGCT 1 cut(s) 111
AluI AGCT 1 cut(s) 111
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 111
AspLEI GCGC 2 cut(s) 46, 152
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BisI GCNGC 1 cut(s) 112
BlpI GCTNAGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 113
Bpu1102I GCTNAGC 1 cut(s) 259
Bsa29I ATCGAT 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 18
BseCI ATCGAT 1 cut(s) 234
BseMI GCAATG 1 cut(s) 18
BseRI GAGGAG 2 cut(s) 58, 61
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 92
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 234
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 235
Bsp1720I GCTNAGC 1 cut(s) 259
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 18
BssMI GATC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 259
BstFNI CGCG 1 cut(s) 44
BstHHI GCGC 2 cut(s) 46, 152
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 3 cut(s) 43, 108, 125
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 234
BsuRI GGCC 1 cut(s) 32
BsuTUI ATCGAT 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 2 cut(s) 46, 152
ClaI ATCGAT 1 cut(s) 234
CseI GACGC 2 cut(s) 125, 230
Csp6I GTAC 1 cut(s) 131
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 5, 32, 111, 244, 258
CviKI_1 RGCY 5 cut(s) 5, 32, 111, 244, 258
CviQI GTAC 1 cut(s) 131
DdeI CTNAG 1 cut(s) 259
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 126, 265
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 112
FspI TGCGCA 1 cut(s) 151
GlaI GCGC 2 cut(s) 45, 151
GluI GCNGC 1 cut(s) 112
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 2 cut(s) 125, 230
HhaI GCGC 2 cut(s) 46, 152
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 2 cut(s) 44, 150
HinP1I GCGC 2 cut(s) 44, 150
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 76, 184
Hpy188III TCNNGA 1 cut(s) 176
Hpy99I CGWCG 2 cut(s) 119, 224
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 108, 125
HpyF3I CTNAG 1 cut(s) 259
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 2 cut(s) 44, 150
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 3 cut(s) 78, 150, 161
Lsp1109I GCAGC 1 cut(s) 98
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 260
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 4 cut(s) 79, 82, 157, 247
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 43, 108, 125
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 37
NsbI TGCGCA 1 cut(s) 151
PfeI GAWTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 92
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 260
SetI ASST 2 cut(s) 113, 139
SsiI CCGC 1 cut(s) 128
TaqI TCGA 2 cut(s) 234, 252
TaqII GACCGA 1 cut(s) 161
TfiI GAWTC 1 cut(s) 179
TseI GCWGC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.