Rorug02G0490500

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000334
Physical Location & Seq
Forward (+)
61945845 .. 61946653
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0490500.1

Sequence Viewer

Length: 597 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAATCTTCCATGGAACAACGAGGAGGAGTTCGCCAGGAGTTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTATGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATATGATTACTATTTCGGTGGCGCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

198

Amino Acids

21.7

Weight (kDa)

5.11

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 4.1e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 1 cut(s) 531
AclWI GGATC 6 cut(s) 118, 131, 141, 330, 343, 553
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 452
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 3 cut(s) 92, 322, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 7, 199, 565, 587
AluI AGCT 4 cut(s) 7, 199, 565, 587
Alw21I GWGCWC 2 cut(s) 453, 567
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 6 cut(s) 118, 131, 141, 330, 343, 553
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 199, 293
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 2 cut(s) 503, 527
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 2 cut(s) 306, 453
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 453, 567
BbvI GCAGC 3 cut(s) 62, 186, 280
BccI CCATC 2 cut(s) 26, 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 3 cut(s) 94, 324, 419
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 200, 294
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 3 cut(s) 52, 201, 295
Bme1390I CCNGG 4 cut(s) 55, 94, 324, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BmrFI CCNGG 4 cut(s) 55, 94, 324, 419
BpiI GAAGAC 1 cut(s) 485
BpmI CTGGAG 4 cut(s) 93, 179, 399, 534
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 282, 581
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 4 cut(s) 306, 393, 489, 541
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 452
Bse1I ACTGG 4 cut(s) 334, 367, 376, 551
Bse21I CCTNAGG 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 3 cut(s) 94, 324, 419
BseDI CCNNGG 4 cut(s) 306, 393, 489, 541
BseGI GGATG 2 cut(s) 37, 578
BseLI CCNNNNNNNGG 2 cut(s) 329, 452
BseMII CTCAG 2 cut(s) 142, 580
BseNI ACTGG 4 cut(s) 334, 367, 376, 551
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 2 cut(s) 306, 453
BseXI GCAGC 3 cut(s) 62, 186, 280
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 582
BslI CCNNNNNNNGG 2 cut(s) 329, 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 2 cut(s) 306, 393
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 141, 579
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BspPI GGATC 6 cut(s) 118, 131, 141, 330, 343, 553
BsrI ACTGG 4 cut(s) 334, 367, 376, 551
BssECI CCNNGG 4 cut(s) 306, 393, 489, 541
BssMI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 2 cut(s) 306, 393
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 3 cut(s) 94, 324, 419
Bst4CI ACNGT 2 cut(s) 207, 542
Bst6I CTCTTC 2 cut(s) 272, 438
BstACI GRCGYC 1 cut(s) 462
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 2 cut(s) 128, 566
BstDSI CCRYGG 3 cut(s) 306, 393, 541
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 2 cut(s) 37, 578
BstHHI GCGC 2 cut(s) 503, 527
BstKTI GATC 7 cut(s) 115, 126, 136, 189, 338, 346, 548
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
BstNI CCWGG 3 cut(s) 94, 324, 419
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 53, 92, 322, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 306, 453
BstV1I GCAGC 3 cut(s) 62, 186, 280
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 5 cut(s) 123, 133, 186, 335, 545
BstYI RGATCY 5 cut(s) 123, 133, 186, 335, 545
Bsu36I CCTNAGG 1 cut(s) 128
BtgI CCRYGG 3 cut(s) 306, 393, 541
BtsCI GGATG 2 cut(s) 37, 578
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 529
CfoI GCGC 2 cut(s) 503, 527
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 327
CviAII CATG 2 cut(s) 307, 394
CviJI RGCY 9 cut(s) 7, 53, 87, 199, 260, 293, 565, 570, 587
CviKI_1 RGCY 9 cut(s) 7, 53, 87, 199, 260, 293, 565, 570, 587
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 2 cut(s) 128, 566
DpnI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 547
DpnII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
Eam1104I CTCTTC 2 cut(s) 272, 438
EarI CTCTTC 2 cut(s) 272, 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 306, 393
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 565
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 92, 322, 417
EcoT14I CCWWGG 2 cut(s) 306, 393
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 2 cut(s) 306, 393
FaeI CATG 2 cut(s) 310, 397
FaiI YATR 6 cut(s) 210, 308, 395, 468, 505, 507
FatI CATG 2 cut(s) 306, 393
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 51, 200, 294
FokI GGATG 2 cut(s) 44, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 3 cut(s) 51, 200, 294
FspBI CTAG 1 cut(s) 315
GlaI GCGC 2 cut(s) 502, 526
GluI GCNGC 3 cut(s) 51, 200, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 4 cut(s) 93, 179, 399, 534
HapII CCGG 2 cut(s) 54, 582
HhaI GCGC 2 cut(s) 503, 527
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 310, 397
Hin6I GCGC 2 cut(s) 501, 525
HinP1I GCGC 2 cut(s) 501, 525
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 54, 582
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 2 cut(s) 207, 542
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 3 cut(s) 202, 285, 451
HpyF3I CTNAG 2 cut(s) 128, 566
HpySE526I ACGT 1 cut(s) 462
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 310, 397
HspAI GCGC 2 cut(s) 501, 525
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
LmnI GCTCC 2 cut(s) 4, 584
Lsp1109I GCAGC 3 cut(s) 62, 186, 280
MaeI CTAG 1 cut(s) 315
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 470, 533
MalI GATC 7 cut(s) 114, 125, 135, 188, 337, 345, 547
MboI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
MboII GAAGA 4 cut(s) 289, 381, 425, 490
MflI RGATCY 5 cut(s) 123, 133, 186, 335, 545
MhlI GDGCHC 4 cut(s) 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 581
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 2 cut(s) 54, 582
MspR9I CCNGG 4 cut(s) 55, 94, 324, 419
MvaI CCWGG 3 cut(s) 94, 324, 419
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 2 cut(s) 306, 393
NdeI CATATG 1 cut(s) 505
NdeII GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
NlaIII CATG 2 cut(s) 310, 397
NlaIV GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 52, 201, 295
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 92, 322, 417
PspEI GGTNACC 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 92, 322, 417
PspN4I GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 5 cut(s) 123, 133, 186, 335, 545
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 200, 294
Sau3AI GATC 7 cut(s) 112, 123, 133, 186, 335, 343, 545
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 4 cut(s) 55, 94, 324, 419
SduI GDGCHC 4 cut(s) 262, 306, 453, 567
SetI ASST 9 cut(s) 9, 98, 201, 219, 284, 465, 499, 567, 589
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 261, 297, 560
SmoI CTYRAG 3 cut(s) 261, 297, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 4 cut(s) 53, 92, 322, 417
StyI CCWWGG 2 cut(s) 306, 393
TaaI ACNGT 2 cut(s) 207, 542
TaiI ACGT 1 cut(s) 465
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 367
TseI GCWGC 3 cut(s) 50, 199, 293
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 367
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 1 cut(s) 315
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.