FvH4_3g39491

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000334
Physical Location & Seq
Reverse (-)
33590061 .. 33590684
624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39491.t1

Sequence Viewer

Length: 318 bp
ATGTTGTTAATAGAGGATCGGCTTCAGAGAAACAAGAACATGGCCAAGTCCACCAACACATTTGCAGTAGCTCTTAACCTGATTCTGGTGGTATCTCTTATGATTTCCGTCTCTGAGGGTAAACACATCGGAGTGCATGGTTTCGACGCAGATTGCGATTCTGTCTACGGAGCAGAGTCTGGTGATTCCTGCAATAGTGTCATTGAAAAATTCGGAATAAGTAGTTTAGACTTCTTCATTAGCATCAACCCCAATTGCAATTGTGACGCCTTCTTCGAGGGGCAATGGCTTTGTGTTGATGGCAACCCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

106

Amino Acids

11.45

Weight (kDa)

4.44

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 165
AclWI GGATC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 8
AcyI GRCGYC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 24
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 209
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuHPI GGTGA 1 cut(s) 194
BalI TGGCCA 1 cut(s) 44
BccI CCATC 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 115
BmsI GCATC 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 290
BssMI GATC 1 cut(s) 16
BssNI GRCGYC 1 cut(s) 267
BstACI GRCGYC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 179
CseI GACGC 2 cut(s) 155, 275
CviAII CATG 2 cut(s) 40, 137
CviJI RGCY 4 cut(s) 22, 44, 71, 289
CviKI_1 RGCY 4 cut(s) 22, 44, 71, 289
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 2 cut(s) 43, 140
FaiI YATR 3 cut(s) 41, 101, 138
FatI CATG 2 cut(s) 39, 136
FblI GTMKAC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 44
HgaI GACGC 2 cut(s) 155, 275
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 2 cut(s) 43, 140
HinfI GANTC 4 cut(s) 82, 158, 176, 185
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 3 cut(s) 51, 122, 166
Hpy188I TCNGA 4 cut(s) 27, 115, 131, 215
Hpy8I GTNNAC 3 cut(s) 51, 122, 166
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 4 cut(s) 65, 136, 192, 258
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 2 cut(s) 43, 140
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 4 cut(s) 71, 92, 165, 202
LweI GCATC 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 263
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 226, 265
MfeI CAATTG 2 cut(s) 253, 259
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 3 cut(s) 209, 253, 259
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 3 cut(s) 7, 109, 271
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 8, 75
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 44
MunI CAATTG 2 cut(s) 253, 259
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 43, 140
NmuCI GTSAC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 273
PfeI GAWTC 3 cut(s) 82, 158, 185
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 2 cut(s) 8, 75
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 185
SetI ASST 2 cut(s) 73, 81
SfaNI GCATC 1 cut(s) 252
SgeI CNNG 9 cut(s) 46, 52, 58, 91, 98, 149, 192, 201, 289
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 3 cut(s) 209, 253, 259
TaqI TCGA 2 cut(s) 144, 276
TasI AATT 3 cut(s) 209, 253, 259
TfiI GAWTC 3 cut(s) 82, 158, 185
Tru1I TTAA 2 cut(s) 8, 75
Tru9I TTAA 2 cut(s) 8, 75
TseFI GTSAC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 226
TspGWI ACGGA 2 cut(s) 97, 183
XapI RAATTY 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.