FvH4_6g44501

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000334
Physical Location & Seq
Forward (+)
34282373 .. 34282794
422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44501.t1

Sequence Viewer

Length: 288 bp
ATGGCTAAGCTTAACTTGATTCTACTTCTAGTTGTCTCTCTTCTTGTCATCATTTCAGTAGCTGAGAGTAAACGACTTGGTGGCATTGCAGTTGCTCATGGATTTGGAAAGAGGACTCCGACCCTGGTTTGTAATGCCGTTTATGGTGCAGAAGAAGGTGATACTTGCGGTAGTGTTGCTCAAACTTTCAAACTGAGTCTCCAATCCTTCCTTGCAATCAACCCTAATATCAACTGCAAGAGCTTTTTCGTGGGTCAATGGCTATGTACTGATGGCACTACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

96

Amino Acids

10.07

Weight (kDa)

8.82

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 52 - 89 1.9e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 190
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 3 cut(s) 10, 62, 243
AluI AGCT 3 cut(s) 10, 62, 243
Alw26I GTCTC 2 cut(s) 40, 203
AlwNI CAGNNNCTG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 170
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 40, 203
BfaI CTAG 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 54, 185
BsgI GTGCAG 1 cut(s) 168
BsmAI GTCTC 2 cut(s) 40, 203
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 1 cut(s) 168
BspCNI CTCAG 2 cut(s) 55, 186
BsrDI GCAATG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 3 cut(s) 6, 63, 194
BstMAI GTCTC 2 cut(s) 40, 203
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 62
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 98
CviJI RGCY 5 cut(s) 5, 10, 62, 243, 262
CviKI_1 RGCY 5 cut(s) 5, 10, 62, 243, 262
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 3 cut(s) 6, 63, 194
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 144, 265
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 97
FspBI CTAG 1 cut(s) 29
Hin1II CATG 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 19, 115, 196
HphI GGTGA 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 120
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 149, 217
HpyCH4V TGCA 4 cut(s) 89, 149, 215, 237
HpyF3I CTNAG 3 cut(s) 6, 63, 194
Hsp92II CATG 1 cut(s) 101
LpnPI CCDG 2 cut(s) 110, 137
MaeI CTAG 1 cut(s) 29
MboII GAAGA 2 cut(s) 32, 164
MlyI GAGTC 2 cut(s) 109, 205
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 105
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
NlaIII CATG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 2 cut(s) 109, 204
PpsI GAGTC 2 cut(s) 109, 204
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 12
SchI GAGTC 2 cut(s) 109, 205
ScrFI CCNGG 1 cut(s) 125
SetI ASST 4 cut(s) 12, 64, 160, 245
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 123
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.