FvH4_6g24132

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000334
Physical Location & Seq
Forward (+)
18195902 .. 18197020
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24132.t1

Sequence Viewer

Length: 393 bp
ATGACCACATGCAGGTACTCGCTCGGGTTAGTAAAAACCTCGATGTGGAACTTGGAGAACCCCTCAAGCTCCCCCTTTTACAAGACAAAGCTTGCCTACGACGTACGCAATTCTCAATTCAGAAAGATCGCTTACATGTACATGCATGGACATTTGCAGATCGGCCATGGAGGATTTCAACTTTTCAAGTTGGTTTTGCTTCTTTTAGAGAAGAAGGCTCCGCCTGCACTGGTCTGTAATTCCGTTTATGGTGCAGAAGAAGGTGATACTTGCACCAGTGTTGCTCAACAGTTCAAACGTAGTCTCAACTTGTTCCTTGCCATCAACCCCAATATCAACTGCAACAGCTTCTTTGTGGGTCAATGGCTTTGTACTGACGGTGTTAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

131

Amino Acids

14.69

Weight (kDa)

9.3

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 3
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 163
AfaI GTAC 4 cut(s) 17, 105, 140, 373
AfiI CCNNNNNNNGG 2 cut(s) 12, 45
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 179, 187, 295
AluBI AGCT 3 cut(s) 69, 91, 348
AluI AGCT 3 cut(s) 69, 91, 348
Alw26I GTCTC 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 23
BccI CCATC 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 3
BmeT110I CYCGRG 1 cut(s) 23
BmiI GGNNCC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 45
Bse1I ACTGG 2 cut(s) 234, 276
BseDI CCNNGG 1 cut(s) 166
BseLI CCNNNNNNNGG 2 cut(s) 12, 45
BseNI ACTGG 2 cut(s) 234, 276
BsgI GTGCAG 2 cut(s) 210, 273
BshFI GGCC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 23
BsiWI CGTACG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 12, 45
BsmAI GTCTC 1 cut(s) 308
BsnI GGCC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 2 cut(s) 126, 159
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 3
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 2 cut(s) 234, 276
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 126, 159
BssT1I CCWWGG 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 291, 380
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 93, 225
BstDSI CCRYGG 1 cut(s) 166
BstKTI GATC 2 cut(s) 129, 162
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 2 cut(s) 126, 159
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 3 cut(s) 12, 139, 145
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 227, 283
BveI ACCTGC 1 cut(s) 3
Cac8I GCNNGC 2 cut(s) 93, 225
Csp6I GTAC 4 cut(s) 16, 104, 139, 372
CviAII CATG 5 cut(s) 9, 136, 142, 146, 167
CviJI RGCY 6 cut(s) 69, 91, 165, 218, 348, 367
CviKI_1 RGCY 6 cut(s) 69, 91, 165, 218, 348, 367
CviQI GTAC 4 cut(s) 16, 104, 139, 372
DpnI GATC 2 cut(s) 128, 161
DpnII GATC 2 cut(s) 126, 159
EaeI YGGCCR 1 cut(s) 163
EciI GGCGGA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 5 cut(s) 12, 139, 145, 149, 170
FaiI YATR 6 cut(s) 10, 137, 143, 147, 168, 249
FatI CATG 5 cut(s) 8, 135, 141, 145, 166
HaeIII GGCC 1 cut(s) 165
Hin1II CATG 5 cut(s) 12, 139, 145, 149, 170
HindIII AAGCTT 1 cut(s) 89
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 1 cut(s) 122
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 208, 254
HpyCH4III ACNGT 2 cut(s) 291, 380
HpyCH4IV ACGT 2 cut(s) 102, 298
HpyCH4V TGCA 7 cut(s) 12, 145, 157, 227, 254, 273, 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpySE526I ACGT 2 cut(s) 102, 298
Hsp92II CATG 5 cut(s) 12, 139, 145, 149, 170
Kzo9I GATC 2 cut(s) 126, 159
LmnI GCTCC 2 cut(s) 74, 223
LpnPI CCDG 3 cut(s) 215, 237, 289
MaeII ACGT 2 cut(s) 102, 298
MalI GATC 2 cut(s) 128, 161
MboI GATC 2 cut(s) 126, 159
MboII GAAGA 2 cut(s) 223, 269
MluCI AATT 3 cut(s) 109, 116, 238
MnlI CCTC 3 cut(s) 49, 73, 164
Mph1103I ATGCAT 1 cut(s) 147
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 166
NdeII GATC 2 cut(s) 126, 159
NlaIII CATG 5 cut(s) 12, 139, 145, 149, 170
NlaIV GGNNCC 1 cut(s) 219
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 3 cut(s) 12, 139, 145
PciI ACATGT 1 cut(s) 135
Pfl23II CGTACG 1 cut(s) 103
PscI ACATGT 1 cut(s) 135
PspLI CGTACG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 4 cut(s) 17, 105, 140, 373
RsaNI GTAC 4 cut(s) 16, 104, 139, 372
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 2 cut(s) 126, 159
SetI ASST 8 cut(s) 17, 41, 71, 93, 105, 265, 301, 350
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 3 cut(s) 109, 116, 238
SsiI CCGC 1 cut(s) 221
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 291, 380
TaiI ACGT 2 cut(s) 105, 301
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 109, 116, 238
TatI WGTACW 2 cut(s) 138, 371
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 234, 283
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 2 cut(s) 234, 283
XceI RCATGY 3 cut(s) 12, 139, 145
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.