FvH4_4g25661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000334
Physical Location & Seq
Forward (+)
27388001 .. 27388507
507 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25661.t1

Sequence Viewer

Length: 507 bp
ATGACTAACACTTGTCTCACTCTCACTCAAAAACTCTCTCAACTCCCTTTCTTCTTCACAACTCTTTGCAACTCCCAGCAGATACGGAAGCACTCGGAAGGGGGAGAATGTGGAGGAGTGGCGGGCGAGAAAGGCAGAGCCGGGGAGGCGGCGGGAGCAGGATTTGCAGGCAGAACAGCGGAGCCAGACGAGGTCGCTGCCTGTGTCGGCGACGAGGAGGAGGGGCTGCAGAGGGGAGCCGAGGCGGAGGTGGACGAAGTACTGGCCGGAGCCAGTGGAGGCGTCGGAGACGATGGGGGAGGCGGCGGTGGGAGTGGAGGACAGAGAGGCGGAGGCAGTCGGACGAGAGGGCTTGGGTGGGGGTTGGGGAGGGTTGAATGTGGAGGAGGGGGAGTTGCAGAGAGTTGTGAAGAAGAAGAAGAAGAAAGGGAGTTGGGAGAGTTTTTGAGTGAGAGTGGGACATGTGTTATTCATTTAAGTGGGTGGGGAGCAAAGTTGAGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

16.87

Weight (kDa)

4.51

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 122, 149, 152, 179, 245, 303, 306, 330
AcoI YGGCCR 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 261
AflIII ACRYGT 1 cut(s) 461
AgsI TTSAA 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 20, 282
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 197, 226
AsuC2I CCSGG 1 cut(s) 142
BbvI GCAGC 2 cut(s) 184, 213
BccI CCATC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 20, 282
BfmI CTRYAG 1 cut(s) 227
BglI GCCNNNNNGGC 1 cut(s) 146
BisI GCNGC 4 cut(s) 150, 198, 227, 304
BlsI GCNGC 4 cut(s) 151, 199, 228, 305
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 142
BmiI GGNNCC 3 cut(s) 183, 238, 271
BmrFI CCNGG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 141, 240
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bse1I ACTGG 2 cut(s) 267, 273
BseDI CCNNGG 2 cut(s) 141, 240
BseNI ACTGG 2 cut(s) 267, 273
BseRI GAGGAG 4 cut(s) 129, 230, 233, 399
BseXI GCAGC 2 cut(s) 184, 213
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 1 cut(s) 266
BsiSI CCGG 2 cut(s) 141, 267
BslFI GGGAC 1 cut(s) 472
BsmAI GTCTC 2 cut(s) 20, 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 472
BsnI GGCC 1 cut(s) 266
BspACI CCGC 8 cut(s) 122, 149, 152, 179, 245, 303, 306, 330
BspANI GGCC 1 cut(s) 266
BspLI GGNNCC 3 cut(s) 183, 238, 271
BspMAI CTGCAG 1 cut(s) 231
BsrI ACTGG 2 cut(s) 267, 273
BssECI CCNNGG 2 cut(s) 141, 240
BssNI GRCGYC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 124, 169
BstMAI GTCTC 2 cut(s) 20, 282
BstMWI GCNNNNNNNGC 4 cut(s) 132, 146, 155, 164
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 184, 213
BsuRI GGCC 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 124, 169
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 462
CviJI RGCY 7 cut(s) 140, 184, 226, 239, 266, 272, 352
CviKI_1 RGCY 7 cut(s) 140, 184, 226, 239, 266, 272, 352
CviQI GTAC 1 cut(s) 260
EaeI YGGCCR 1 cut(s) 264
EciI GGCGGA 2 cut(s) 260, 345
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 1 cut(s) 465
FaiI YATR 1 cut(s) 463
FaqI GGGAC 1 cut(s) 472
FatI CATG 1 cut(s) 461
FauI CCCGC 2 cut(s) 115, 145
Fnu4HI GCNGC 4 cut(s) 150, 198, 227, 304
Fsp4HI GCNGC 4 cut(s) 150, 198, 227, 304
GluI GCNGC 4 cut(s) 150, 198, 227, 304
GsaI CCCAGC 1 cut(s) 79
HaeIII GGCC 1 cut(s) 266
HapII CCGG 2 cut(s) 141, 267
HgaI GACGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 465
HpaII CCGG 2 cut(s) 141, 267
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 97, 287, 342
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 215, 287
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 69, 167, 229, 398
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 146, 155, 164
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 465
LmnI GCTCC 5 cut(s) 155, 181, 236, 269, 488
LpnPI CCDG 9 cut(s) 89, 144, 153, 154, 198, 214, 248, 280, 286
Lsp1109I GCAGC 2 cut(s) 184, 213
MboII GAAGA 7 cut(s) 43, 46, 422, 425, 428, 431, 434
MmeI TCCRAC 2 cut(s) 265, 320
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 141, 267
MspR9I CCNGG 1 cut(s) 142
MwoI GCNNNNNNNGC 4 cut(s) 132, 146, 155, 164
NciI CCSGG 1 cut(s) 142
NlaIII CATG 1 cut(s) 465
NlaIV GGNNCC 3 cut(s) 183, 238, 271
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 1 cut(s) 465
PciI ACATGT 1 cut(s) 461
PflFI GACNNNGTC 1 cut(s) 191
PkrI GCNGC 4 cut(s) 151, 199, 228, 305
PscI ACATGT 1 cut(s) 461
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 183, 238, 271
PstI CTGCAG 1 cut(s) 231
PsyI GACNNNGTC 1 cut(s) 191
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 4 cut(s) 150, 198, 227, 304
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 142
SetI ASST 2 cut(s) 195, 252
SfcI CTRYAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 477
SsiI CCGC 8 cut(s) 122, 149, 152, 179, 245, 303, 306, 330
StyD4I CCNGG 1 cut(s) 140
TatI WGTACW 1 cut(s) 259
TauI GCSGC 2 cut(s) 152, 306
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 197, 226
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 100
TspRI CASTG 1 cut(s) 280
Tth111I GACNNNGTC 1 cut(s) 191
XceI RCATGY 1 cut(s) 465
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.