Rorug07G0286000

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000334
Physical Location & Seq
Forward (+)
27779603 .. 27779996
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0286000.1

Sequence Viewer

Length: 315 bp
ATGAGAGCAGGCCTTCTACTTGTGATTCACCAAGGCATGATGAATGTTGACATTGAAACTGATTGTGCGACGGTGGTTACTGCACTAAAGGGAGAGTCTGAAGACCTGTCAGAGGTGGCAAATGGTGTAGCTCATAGATTAACGCACATTGCTAGTTCAGGTTATTTAGATGAGTATTGGCTAGAGGAGGCACCTGTGATTATCCAGGATGTCCTCTATGAGGATTCTTGTACTAGTACTCGAGGTGAAGGTTATATGTCCCCCTCGTTGTACAATCATCCTTCTTCTATTAATAATATTCGGGCGTGGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

4.47

Isoelectric Point (pI)

57.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 3 cut(s) 232, 238, 272
AfiI CCNNNNNNNGG 2 cut(s) 112, 220
AgsI TTSAA 1 cut(s) 56
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 240
AoxI GGCC 1 cut(s) 10
AseI ATTAAT 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 20, 257
AvaI CYCGRG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 206
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 3 cut(s) 153, 182, 234
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 220
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 214, 277
BseLI CCNNNNNNNGG 2 cut(s) 112, 220
BseMI GCAATG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 240
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 2 cut(s) 112, 220
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 1 cut(s) 12
BsoBI CYCGRG 1 cut(s) 240
Bsp1407I TGTACA 1 cut(s) 270
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 147
BsrGI TGTACA 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 73
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 10
BstENI CCTNNNNNAGG 2 cut(s) 110, 218
BstF5I GGATG 2 cut(s) 214, 277
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 108
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 214, 277
Cac8I GCNNGC 1 cut(s) 10
Csp6I GTAC 3 cut(s) 231, 237, 271
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 12, 131, 181, 312
CviKI_1 RGCY 4 cut(s) 12, 131, 181, 312
CviQI GTAC 3 cut(s) 231, 237, 271
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 240
EcoNI CCTNNNNNAGG 2 cut(s) 110, 218
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 40
FaiI YATR 5 cut(s) 38, 135, 219, 255, 257
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 36
FokI GGATG 2 cut(s) 221, 264
FspBI CTAG 3 cut(s) 153, 182, 234
HaeIII GGCC 1 cut(s) 12
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 3 cut(s) 25, 95, 224
HphI GGTGA 2 cut(s) 20, 257
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 100, 112
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 23, 242, 291
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 83
Hsp92II CATG 1 cut(s) 40
LpnPI CCDG 5 cut(s) 119, 144, 191, 207, 218
MaeI CTAG 3 cut(s) 153, 182, 234
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 113, 276
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 7 cut(s) 106, 178, 181, 214, 224, 236, 274
MseI TTAA 2 cut(s) 140, 291
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 192
PaeR7I CTCGAG 1 cut(s) 240
PceI AGGCCT 1 cut(s) 12
PfeI GAWTC 2 cut(s) 25, 224
PfoI TCCNGGA 1 cut(s) 204
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshBI ATTAAT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 192
PspXI VCTCGAGB 1 cut(s) 240
RsaI GTAC 3 cut(s) 232, 238, 272
RsaNI GTAC 3 cut(s) 231, 237, 271
SaqAI TTAA 2 cut(s) 140, 291
ScaI AGTACT 1 cut(s) 238
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 206
SetI ASST 7 cut(s) 108, 117, 133, 163, 196, 247, 253
Sfr274I CTCGAG 1 cut(s) 240
SlaI CTCGAG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
SpeI ACTAGT 1 cut(s) 233
SseBI AGGCCT 1 cut(s) 12
SspI AATATT 1 cut(s) 298
SspMI CTAG 3 cut(s) 153, 182, 234
StuI AGGCCT 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 241
TatI WGTACW 3 cut(s) 230, 236, 270
TfiI GAWTC 2 cut(s) 25, 224
Tru1I TTAA 2 cut(s) 140, 291
Tru9I TTAA 2 cut(s) 140, 291
TspDTI ATGAA 1 cut(s) 56
VspI ATTAAT 1 cut(s) 291
XagI CCTNNNNNAGG 2 cut(s) 110, 218
XhoI CTCGAG 1 cut(s) 240
XspI CTAG 3 cut(s) 153, 182, 234
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.