FvH4_6g44490

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000334
Physical Location & Seq
Forward (+)
34269778 .. 34271965
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44490.t1

Sequence Viewer

Length: 468 bp
ATGAACTACCTCAACCGCGTTTGGATGGCCGCTAGTGTTGCCACGGTGCCGCCGGCCCCTTCCGATCATCTCCCCTCATGGAACTCCCCTCTCAACTCCTTTCAGCTCACCCGGAGGCGATCCGACGGGGACGCCGCGCCTTCCGATCTCCGGCCTTCGTCTGGGTCGGGCGTGTCCGTAGGAGGAGTAGGCGGGAAGTGCGAGGAGAGACGACAGCAGTCCGACGAGTCTCTGCAGCGAGTCATGGAGGATGGGTTGTTGTGGAAGATGATGGGTAACTCTGATTGTTCAGTTGACCGGGATAGTGGTCGGAATCATAATAGGCTGGTGATAGAGGCTGGTGATACCTGCGGTAGCGTTGTTGACAAGTTCCAGTTGAGTTTCGACTTCTTCCTTTCCATCAATCCTAATATCAACTGCGACAGCTTCTTCGTGGGTCAATGGCTTTGTACTGATGGCACCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

4.89

Isoelectric Point (pI)

70.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 356
AccB1I GGYRCC 2 cut(s) 46, 458
AccII CGCG 2 cut(s) 18, 137
AciI CCGC 7 cut(s) 16, 30, 50, 135, 192, 351, 462
AclWI GGATC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 150, 161
AluBI AGCT 2 cut(s) 106, 426
AluI AGCT 2 cut(s) 106, 426
Alw26I GTCTC 2 cut(s) 202, 234
AlwI GGATC 1 cut(s) 114
AoxI GGCC 3 cut(s) 27, 54, 152
ApeKI GCWGC 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 2 cut(s) 112, 299
AsuHPI GGTGA 3 cut(s) 100, 340, 353
BanI GGYRCC 2 cut(s) 46, 458
BbvI GCAGC 1 cut(s) 247
BccI CCATC 5 cut(s) 19, 245, 265, 407, 449
BcnI CCSGG 2 cut(s) 112, 299
BcoDI GTCTC 2 cut(s) 202, 234
BfaI CTAG 1 cut(s) 33
BfmI CTRYAG 1 cut(s) 233
BfuAI ACCTGC 1 cut(s) 356
BisI GCNGC 4 cut(s) 30, 50, 135, 236
BlsI GCNGC 4 cut(s) 31, 51, 136, 237
Bme1390I CCNGG 2 cut(s) 112, 299
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 48, 57, 460
BmrFI CCNGG 2 cut(s) 112, 299
BoxI GACNNNNGTC 1 cut(s) 217
BpuMI CCSGG 2 cut(s) 112, 299
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 42
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 161
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 42
BseGI GGATG 2 cut(s) 30, 256
BseLI CCNNNNNNNGG 2 cut(s) 150, 161
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 2 cut(s) 198, 218
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 18, 137
BshFI GGCC 3 cut(s) 29, 56, 154
BshNI GGYRCC 2 cut(s) 46, 458
BsiSI CCGG 4 cut(s) 53, 112, 151, 298
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 150, 161
BsmAI GTCTC 2 cut(s) 202, 234
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 3 cut(s) 29, 56, 154
Bsp143I GATC 3 cut(s) 64, 119, 145
BspACI CCGC 7 cut(s) 16, 30, 50, 135, 192, 351, 462
BspANI GGCC 3 cut(s) 29, 56, 154
BspFNI CGCG 2 cut(s) 18, 137
BspLI GGNNCC 3 cut(s) 48, 57, 460
BspMAI CTGCAG 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 1 cut(s) 114
BspT107I GGYRCC 2 cut(s) 46, 458
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 42
BssMI GATC 3 cut(s) 64, 119, 145
BssNI GRCGYC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 2 cut(s) 30, 256
BstFNI CGCG 2 cut(s) 18, 137
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 3 cut(s) 67, 122, 148
BstMAI GTCTC 2 cut(s) 202, 234
BstMBI GATC 3 cut(s) 64, 119, 145
BstMWI GCNNNNNNNGC 2 cut(s) 38, 198
BstPAI GACNNNNGTC 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 110, 297
BstSFI CTRYAG 1 cut(s) 233
BstUI CGCG 2 cut(s) 18, 137
BstV1I GCAGC 1 cut(s) 247
BsuRI GGCC 3 cut(s) 29, 56, 154
BtgI CCRYGG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 30, 256
BveI ACCTGC 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 54
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 450
CviAII CATG 2 cut(s) 78, 244
CviJI RGCY 8 cut(s) 29, 56, 106, 154, 325, 338, 426, 445
CviKI_1 RGCY 8 cut(s) 29, 56, 106, 154, 325, 338, 426, 445
CviQI GTAC 1 cut(s) 450
DpnI GATC 3 cut(s) 66, 121, 147
DpnII GATC 3 cut(s) 64, 119, 145
EaeI YGGCCR 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 2 cut(s) 81, 247
FaiI YATR 4 cut(s) 79, 245, 318, 466
FaqI GGGAC 1 cut(s) 143
FatI CATG 2 cut(s) 77, 243
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 4 cut(s) 30, 50, 135, 236
FokI GGATG 2 cut(s) 37, 263
Fsp4HI GCNGC 4 cut(s) 30, 50, 135, 236
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 138
GluI GCNGC 4 cut(s) 30, 50, 135, 236
HaeIII GGCC 3 cut(s) 29, 56, 154
HapII CCGG 4 cut(s) 53, 112, 151, 298
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 81, 247
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 2 cut(s) 295, 364
HindII GTYRAC 2 cut(s) 295, 364
HinfI GANTC 3 cut(s) 227, 240, 313
HpaII CCGG 4 cut(s) 53, 112, 151, 298
HphI GGTGA 3 cut(s) 100, 340, 353
Hpy166II GTNNAC 2 cut(s) 295, 364
Hpy188I TCNGA 6 cut(s) 64, 124, 145, 223, 283, 312
Hpy8I GTNNAC 2 cut(s) 295, 364
Hpy99I CGWCG 2 cut(s) 128, 227
HpyAV CCTTC 3 cut(s) 69, 150, 165
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 198
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 81, 247
HspAI GCGC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 3 cut(s) 64, 119, 145
LpnPI CCDG 9 cut(s) 66, 125, 147, 164, 311, 311, 324, 361, 386
Lsp1109I GCAGC 1 cut(s) 247
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 66, 121, 147
MboI GATC 3 cut(s) 64, 119, 145
MboII GAAGA 3 cut(s) 277, 382, 421
MlyI GAGTC 2 cut(s) 236, 249
MmeI TCCRAC 3 cut(s) 147, 246, 290
MnlI CCTC 8 cut(s) 20, 85, 99, 108, 176, 196, 241, 328
MroNI GCCGGC 1 cut(s) 52
MspI CCGG 4 cut(s) 53, 112, 151, 298
MspR9I CCNGG 2 cut(s) 112, 299
MvnI CGCG 2 cut(s) 18, 137
MwoI GCNNNNNNNGC 2 cut(s) 38, 198
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 2 cut(s) 112, 299
NdeII GATC 3 cut(s) 64, 119, 145
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 81, 247
NlaIV GGNNCC 3 cut(s) 48, 57, 460
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 4 cut(s) 31, 51, 136, 237
PleI GAGTC 2 cut(s) 235, 248
PpsI GAGTC 2 cut(s) 235, 248
PshAI GACNNNNGTC 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 48, 57, 460
PspPI GGNCC 1 cut(s) 55
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SatI GCNGC 4 cut(s) 30, 50, 135, 236
Sau3AI GATC 3 cut(s) 64, 119, 145
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 236, 249
ScrFI CCNGG 2 cut(s) 112, 299
SetI ASST 4 cut(s) 12, 108, 350, 428
SfcI CTRYAG 1 cut(s) 233
SsiI CCGC 7 cut(s) 16, 30, 50, 135, 192, 351, 462
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 110, 297
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 1 cut(s) 384
TatI WGTACW 1 cut(s) 449
TauI GCSGC 3 cut(s) 32, 52, 137
TfiI GAWTC 1 cut(s) 313
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 166
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.