RLG00000023183

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
19567964 .. 19569353
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023183

Sequence Viewer

Length: 528 bp
ATGCCCAGCCCTATCTGTAACGGGTCGTTGCCGTGGAGTTCGTCTATAGGTAATGGAGGCAGTATGGACCAGAGGATGGCAAATCTCGGCCTGGGTGGCTCTATAGCACGGCAAGAGAGAGCGATAGAGTTTTTGATGGGGTCTAGCTTTCGCGAAGTTGGTGACGGCGTTGGAGGACTGAACACAGGTGGCAACACTGTAGGCGAATATGTGGAGGCTAAGGAGGTTTGGGAGAGGTTGGTGATGGACTCGAAGGCTTATCCGAATGTTGTTAGTTATAATGTTATGATTAGTGGTTTGTGCAAATGCGGGAGGTTTGGTGAGAGTTTGGAGATATGGAATAGGATGAAGAGGAATGAAAGAGGATGTGATTTGTTTACTTGTAGTTCTTTGATTCATGGGTTGTGTAAAGCGGGGAATGTGGATGAGGCGGAGTGTGGAGGTGTCGGAGACAACATGGGAGGTGGCGGCAGTTGTGGAGGAGAGAGAGGCACTGGGTGTCGAAAGAGAGAGCTTGGGAGGGTGTAG

Protein Analysis

176

Amino Acids

18.48

Weight (kDa)

5.92

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 88 - 117 2.1e-09 PPR repeat
PPR_2 PF13041 88 - 137 1.1e-15 PPR repeat family
PPR PF01535 91 - 119 3.1e-09 PPR repeat
PPR_1 PF12854 124 - 145 1.8e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 279
AccB7I CCANNNNNTGG 1 cut(s) 76
AccII CGCG 1 cut(s) 153
AciI CCGC 4 cut(s) 309, 413, 431, 468
AdeI CACNNNGTG 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 76
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 147, 514
AluI AGCT 2 cut(s) 147, 514
Alw26I GTCTC 1 cut(s) 444
AoxI GGCC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 173, 253, 332
AvaII GGWCC 1 cut(s) 67
BccI CCATC 3 cut(s) 70, 130, 238
BceAI ACGGC 3 cut(s) 16, 125, 181
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 3 cut(s) 45, 102, 198
BglI GCCNNNNNGGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 469
BlsI GCNGC 1 cut(s) 470
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 504
BmuI ACTGGG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 32, 91
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 32, 91
BseGI GGATG 4 cut(s) 81, 351, 371, 430
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 1 cut(s) 495
BseYI CCCAGC 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 444
BsnI GGCC 1 cut(s) 90
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 4 cut(s) 309, 413, 431, 468
BspANI GGCC 1 cut(s) 90
BspFNI CGCG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 2 cut(s) 32, 91
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 344
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 4 cut(s) 81, 351, 371, 430
BstFNI CGCG 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 444
BstMWI GCNNNNNNNGC 1 cut(s) 96
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstSFI CTRYAG 3 cut(s) 45, 102, 198
BstUI CGCG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 4 cut(s) 81, 351, 371, 430
BtsIMutI CAGTG 2 cut(s) 195, 492
BtuMI TCGCGA 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 2 cut(s) 398, 457
CviJI RGCY 7 cut(s) 9, 90, 99, 147, 218, 257, 514
CviKI_1 RGCY 7 cut(s) 9, 90, 99, 147, 218, 257, 514
DdeI CTNAG 1 cut(s) 219
DraIII CACNNNGTG 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EciI GGCGGA 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 401, 460
FaiI YATR 9 cut(s) 47, 65, 104, 210, 279, 287, 337, 399, 458
FatI CATG 2 cut(s) 397, 456
FauI CCCGC 2 cut(s) 302, 406
Fnu4HI GCNGC 1 cut(s) 469
FokI GGATG 4 cut(s) 88, 358, 378, 437
Fsp4HI GCNGC 1 cut(s) 469
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 469
GsaI CCCAGC 1 cut(s) 9
HaeIII GGCC 1 cut(s) 90
Hin1II CATG 2 cut(s) 401, 460
HinfI GANTC 2 cut(s) 248, 394
HphI GGTGA 3 cut(s) 173, 253, 332
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 2 cut(s) 264, 449
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 96
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 2 cut(s) 401, 460
LpnPI CCDG 6 cut(s) 19, 77, 83, 104, 171, 480
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 17, 161
MboII GAAGA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 2 cut(s) 151, 427
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 96
NlaIII CATG 2 cut(s) 401, 460
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 161
NruI TCGCGA 1 cut(s) 153
PfeI GAWTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 1 cut(s) 470
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PsiI TTATAA 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 90
PspPI GGNCC 1 cut(s) 67
RruI TCGCGA 1 cut(s) 153
SatI GCNGC 1 cut(s) 469
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 92
SetI ASST 9 cut(s) 52, 149, 190, 228, 239, 317, 445, 466, 516
SfcI CTRYAG 3 cut(s) 45, 102, 198
SinI GGWCC 1 cut(s) 67
SsiI CCGC 4 cut(s) 309, 413, 431, 468
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 251, 502
TauI GCSGC 1 cut(s) 471
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 2 cut(s) 202, 499
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 362, 372, 386
TspRI CASTG 2 cut(s) 202, 499
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 67
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.