MD09G1090300.v1.1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000334
Physical Location & Seq
Forward (+)
6587071 .. 6587740
670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1090300.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGCTGTGATTATCTCTAACAAAAAAGCAGCCATGTCCCGTAATTTGGTTCTCTTGTTCTGCCTTCTTCTCATCATCTCCTTTGCTGAGGGAAAACAACTAGGCAGCATTGGGTTTGGGGGCCTGAAAGCAGCTCCAAGAGCCCCAAGATGCCAAAAGGTATATGGGGCAAAACTTGGGGATACTTGTGATGGAATCATTCAGAAGTTCAAACTGAATGCTGCTCACTTCTCTGAAATCAACCCTAACCTCAACCGTGACAGTATCTTTGTGGGTCAATGGCTTTGCATTGTTGGCACTACAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

103

Amino Acids

11.02

Weight (kDa)

9.75

Isoelectric Point (pI)

20.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 58 - 97 1.7e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 4 cut(s) 29, 105, 131, 221
ArsI GACNNNNNNTTYG 2 cut(s) 251, 283
AspS9I GGNCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 41, 117, 143, 208
BccI CCATC 1 cut(s) 185
BciVI GTATCC 1 cut(s) 175
BfaI CTAG 1 cut(s) 101
BfuI GTATCC 1 cut(s) 175
BisI GCNGC 4 cut(s) 30, 106, 132, 222
BlsI GCNGC 4 cut(s) 31, 107, 133, 223
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 122
BmsI GCATC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 78
BseXI GCAGC 4 cut(s) 41, 117, 143, 208
BshFI GGCC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 145
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 257, 263
BstDEI CTNAG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 140, 294
BstV1I GCAGC 4 cut(s) 41, 117, 143, 208
BsuI GTATCC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 34
CviJI RGCY 6 cut(s) 5, 32, 123, 134, 143, 283
CviKI_1 RGCY 6 cut(s) 5, 32, 123, 134, 143, 283
DdeI CTNAG 1 cut(s) 87
Eco24I GRGCYC 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 1 cut(s) 37
FaiI YATR 3 cut(s) 35, 163, 165
FaqI GGGAC 1 cut(s) 22
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 4 cut(s) 30, 106, 132, 222
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 4 cut(s) 30, 106, 132, 222
FspBI CTAG 1 cut(s) 101
GluI GCNGC 4 cut(s) 30, 106, 132, 222
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 195
Hpy188I TCNGA 2 cut(s) 204, 235
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 257, 263
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 294
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 1 cut(s) 37
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 1 cut(s) 137
Lsp1109I GCAGC 4 cut(s) 41, 117, 143, 208
LweI GCATC 1 cut(s) 140
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 1 cut(s) 43
MnlI CCTC 2 cut(s) 82, 260
Mva1269I GAATGC 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 140, 294
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 257
PctI GAATGC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 195
PkrI GCNGC 4 cut(s) 31, 107, 133, 223
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 121
SatI GCNGC 4 cut(s) 30, 106, 132, 222
Sau96I GGNCC 1 cut(s) 121
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 136, 162, 252
SfaNI GCATC 1 cut(s) 140
Sse9I AATT 1 cut(s) 43
SspMI CTAG 1 cut(s) 101
TaaI ACNGT 2 cut(s) 257, 263
TasI AATT 1 cut(s) 43
TfiI GAWTC 1 cut(s) 195
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 4 cut(s) 29, 105, 131, 221
Tsp45I GTSAC 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.