Rroxscaffold_2G00088370

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000334
Physical Location & Seq
Reverse (-)
10333368 .. 10337185
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088370.1

Sequence Viewer

Length: 294 bp
ATGCCGGAAAAAGCAAAAAAGAGAAACCGGAGGGAGAGAGAGCTCGGGGAGAGAGAAAAGGAGAGTTACCGAGTGGGTAGTTTCGAAAATGGAAGCTACCACGTTATGTTTAAAGATGACAATTCAGCCATAGTATGCAATTCCGTTTATGGTGCAGAGGTTGGTGATACCTGCAGTAGCGTCGATGATAAGTTCGAATTGAGTCTCGATTTCTTCCTTTCCATCAATCCTAATATCAACTGCGACAGTTTCTTCGTGGGTCAATGGCTTTGTACCGACGGGACTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

4.8

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 179
AfaI GTAC 1 cut(s) 274
AluBI AGCT 2 cut(s) 43, 96
AluI AGCT 2 cut(s) 43, 96
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 44
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 2 cut(s) 84, 195
AvaI CYCGRG 1 cut(s) 44
BanII GRGCYC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 45
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 3 cut(s) 163, 197, 266
BcoDI GTCTC 1 cut(s) 209
BfmI CTRYAG 1 cut(s) 172
BfuAI ACCTGC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 44
Bpu14I TTCGAA 2 cut(s) 84, 195
BsaWI WCCGGW 1 cut(s) 27
BsgI GTGCAG 2 cut(s) 174, 270
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 2 cut(s) 5, 28
BsmAI GTCTC 1 cut(s) 209
BsoBI CYCGRG 1 cut(s) 44
Bsp119I TTCGAA 2 cut(s) 84, 195
Bsp1286I GDGCHC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 179
BspT104I TTCGAA 2 cut(s) 84, 195
Bst4CI ACNGT 2 cut(s) 248, 291
BstBI TTCGAA 2 cut(s) 84, 195
BstMAI GTCTC 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 172
BveI ACCTGC 1 cut(s) 179
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 273
CviJI RGCY 4 cut(s) 43, 96, 128, 268
CviKI_1 RGCY 4 cut(s) 43, 96, 128, 268
CviQI GTAC 1 cut(s) 273
DraI TTTAAA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 45
Eco53kI GAGCTC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 45
FaiI YATR 4 cut(s) 107, 131, 136, 150
FriOI GRGCYC 1 cut(s) 45
HapII CCGG 2 cut(s) 5, 28
HgaI GACGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 202
HpaII CCGG 2 cut(s) 5, 28
HphI GGTGA 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 206
Hpy99I CGWCG 2 cut(s) 185, 281
HpyCH4III ACNGT 2 cut(s) 248, 291
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 138, 155, 174, 287
HpySE526I ACGT 1 cut(s) 102
LpnPI CCDG 3 cut(s) 18, 41, 184
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 65
MboII GAAGA 2 cut(s) 205, 244
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 121, 139, 197
MlyI GAGTC 1 cut(s) 211
MnlI CCTC 2 cut(s) 24, 151
MseI TTAA 1 cut(s) 111
MspI CCGG 2 cut(s) 5, 28
NspV TTCGAA 2 cut(s) 84, 195
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
Psp124BI GAGCTC 1 cut(s) 45
PstI CTGCAG 1 cut(s) 176
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 111
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 45
SetI ASST 5 cut(s) 45, 98, 105, 162, 173
SfcI CTRYAG 1 cut(s) 172
SfuI TTCGAA 2 cut(s) 84, 195
SgeI CNNG 9 cut(s) 17, 40, 56, 58, 83, 113, 183, 218, 268
Sse9I AATT 3 cut(s) 121, 139, 197
SstI GAGCTC 1 cut(s) 45
TaaI ACNGT 2 cut(s) 248, 291
TaiI ACGT 1 cut(s) 105
TaqI TCGA 4 cut(s) 84, 183, 195, 207
TasI AATT 3 cut(s) 121, 139, 197
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TspGWI ACGGA 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.