Prupe.4G037900_v2.0.a1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000334
Physical Location & Seq
Reverse (-)
1787467 .. 1788080
614 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G037900.1

Sequence Viewer

Length: 267 bp
ATGGCTAAGATTATCAACTTGGTTTTGATGCTCTCTCTTCTCCTTGTAGCTGCTTCGGAAGCCCAATTTCTTGCAAATGAGATTTTGAAGCCGCCGGTCACCCTGAAATGTGAATCAGTTTATGGTGTGAAAAGTGGAGACACCTGTTTTACGATTGCACAGACTTTCAGCTTGCCAACTGAGTTCTTCGATTCAATCAATCCCAATCTGAATTGCGCAGCTCTCTTTGTAGGCCAATGGGTTTGTCTTAACGGCACACTTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

89

Amino Acids

9.5

Weight (kDa)

4.66

Isoelectric Point (pI)

21.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 217
AciI CCGC 1 cut(s) 92
AgsI TTSAA 2 cut(s) 88, 195
AluBI AGCT 3 cut(s) 50, 171, 221
AluI AGCT 3 cut(s) 50, 171, 221
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 50, 218
AspLEI GCGC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 91
BbvI GCAGC 2 cut(s) 37, 230
BcoDI GTCTC 1 cut(s) 132
BisI GCNGC 3 cut(s) 51, 92, 219
BlsI GCNGC 3 cut(s) 52, 93, 220
BmsI GCATC 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 94
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 2 cut(s) 37, 230
BshFI GGCC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 1 cut(s) 234
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 6, 180, 260
BstEII GGTNACC 1 cut(s) 97
BstHHI GCGC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstPI GGTNACC 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 37, 230
BsuRI GGCC 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 94
CviJI RGCY 7 cut(s) 5, 50, 62, 91, 171, 221, 234
CviKI_1 RGCY 7 cut(s) 5, 50, 62, 91, 171, 221, 234
DdeI CTNAG 3 cut(s) 6, 180, 260
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco91I GGTNACC 1 cut(s) 97
EcoO65I GGTNACC 1 cut(s) 97
FaiI YATR 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 51, 92, 219
Fsp4HI GCNGC 3 cut(s) 51, 92, 219
FspI TGCGCA 1 cut(s) 217
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 51, 92, 219
HaeIII GGCC 1 cut(s) 234
HapII CCGG 1 cut(s) 95
HhaI GCGC 1 cut(s) 218
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 113, 191
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 58, 210
HpyCH4V TGCA 2 cut(s) 74, 158
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 3 cut(s) 6, 180, 260
HspAI GCGC 1 cut(s) 216
LpnPI CCDG 3 cut(s) 108, 116, 157
Lsp1109I GCAGC 2 cut(s) 37, 230
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 2 cut(s) 29, 178
MluCI AATT 2 cut(s) 65, 211
MseI TTAA 2 cut(s) 249, 265
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 97
NsbI TGCGCA 1 cut(s) 217
PfeI GAWTC 2 cut(s) 113, 191
PkrI GCNGC 3 cut(s) 52, 93, 220
PspEI GGTNACC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 249, 265
SatI GCNGC 3 cut(s) 51, 92, 219
SetI ASST 4 cut(s) 52, 146, 173, 223
SfaNI GCATC 1 cut(s) 18
SgeI CNNG 7 cut(s) 31, 56, 83, 107, 115, 156, 184
Sse9I AATT 2 cut(s) 65, 211
SsiI CCGC 1 cut(s) 92
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 65, 211
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 113, 191
Tru1I TTAA 2 cut(s) 249, 265
Tru9I TTAA 2 cut(s) 249, 265
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 2 cut(s) 50, 218
Tsp45I GTSAC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.