Rmu_sc0009339.1_g000009

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009339.1
OG0000334
Physical Location & Seq
Forward (+)
19968 .. 20329
362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009339.1_g000009.1.cds

Sequence Viewer

Length: 252 bp
atgagcatgttcaatatggttcttgtgctctgtcttttcctcatcgtatcctccgccgagagcagaatactcagcaatgggaatgccaagccagagtgtgacagtgtttatgggataaaccctacaaatcaatgcactaatatcatgcaggcgttcggtctgggtgctgatgaattcttctcaatcaaccccgacctcaattgcagtgctatctttgtgggtcaatggacttgtgtcaatagatcagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

4.3

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 173
AgsI TTSAA 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 58
BfuI GTATCC 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 242
BspACI CCGC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 82
BssMI GATC 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 71
BstKTI GATC 1 cut(s) 245
BstMBI GATC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 233
BsuI GTATCC 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 2 cut(s) 109, 211
Cac8I GCNNGC 1 cut(s) 150
CviAII CATG 2 cut(s) 7, 145
CviJI RGCY 1 cut(s) 91
CviKI_1 RGCY 1 cut(s) 91
DdeI CTNAG 1 cut(s) 71
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
EciI GGCGGA 1 cut(s) 43
EcoRI GAATTC 1 cut(s) 173
FaeI CATG 2 cut(s) 10, 148
FaiI YATR 5 cut(s) 8, 17, 111, 146, 250
FatI CATG 2 cut(s) 6, 144
Hin1II CATG 2 cut(s) 10, 148
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 135, 148, 204
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 10, 148
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 3 cut(s) 105, 134, 146
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 1 cut(s) 169
MfeI CAATTG 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 173, 199
MnlI CCTC 3 cut(s) 50, 61, 206
MunI CAATTG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 88
NdeII GATC 1 cut(s) 242
NlaIII CATG 2 cut(s) 10, 148
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 10
PctI GAATGC 1 cut(s) 88
PshAI GACNNNNGTC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 30
SetI ASST 1 cut(s) 198
Sse9I AATT 2 cut(s) 173, 199
SsiI CCGC 1 cut(s) 54
TaaI ACNGT 1 cut(s) 104
TaqII GACCGA 1 cut(s) 146
TasI AATT 2 cut(s) 173, 199
TscAI CASTG 2 cut(s) 109, 211
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 2 cut(s) 109, 211
XapI RAATTY 1 cut(s) 173
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.