Rh7AG468400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000334
Physical Location & Seq
Reverse (-)
64826183 .. 64849979
23797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG468400.1

Sequence Viewer

Length: 204 bp
ATGTCACCGAGCCAAACAGAGCCAAACCAGATTGCTGCCTGTATCGGCGGCGAGGAGAAGCCTCTGGGGTGGAGTACAGAGGCGAAGGTCGACGAAGTACTAGCCGGAGCTAGTGGAGTTGTCAGAGACAACATGGGAGGTGGCGTCAATTGTGGAGGAGAGAGAGGCGCTGGGTGTCGAAAGAGAGAGCTTGGGAGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

6.84

Weight (kDa)

5.29

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 76, 99
AluBI AGCT 2 cut(s) 110, 190
AluI AGCT 2 cut(s) 110, 190
Alw26I GTCTC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 2 cut(s) 101, 111
BfoI RGCGCY 1 cut(s) 171
BisI GCNGC 2 cut(s) 36, 49
BlsI GCNGC 2 cut(s) 37, 50
BmcAI AGTACT 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
BseRI GAGGAG 2 cut(s) 68, 171
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 120
BspACI CCGC 1 cut(s) 48
BssNI GRCGYC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 170
CseI GACGC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 75, 98
CviAII CATG 1 cut(s) 133
CviJI RGCY 6 cut(s) 12, 22, 61, 104, 110, 190
CviKI_1 RGCY 6 cut(s) 12, 22, 61, 104, 110, 190
CviQI GTAC 2 cut(s) 75, 98
FaeI CATG 1 cut(s) 136
FaiI YATR 1 cut(s) 134
FatI CATG 1 cut(s) 132
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 36, 49
Fsp4HI GCNGC 2 cut(s) 36, 49
FspBI CTAG 2 cut(s) 101, 111
GlaI GCGC 1 cut(s) 169
GluI GCNGC 2 cut(s) 36, 49
GsaI CCCAGC 1 cut(s) 174
HaeII RGCGCY 1 cut(s) 171
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 133
HhaI GCGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 1 cut(s) 168
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 41, 50, 52, 118, 156
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 2 cut(s) 101, 111
MaeIII GTNAC 1 cut(s) 3
MfeI CAATTG 1 cut(s) 148
MluCI AATT 1 cut(s) 148
MnlI CCTC 7 cut(s) 46, 72, 73, 131, 149, 158, 189
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 148
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 3
PkrI GCNGC 2 cut(s) 37, 50
PspFI CCCAGC 1 cut(s) 170
RsaI GTAC 2 cut(s) 76, 99
RsaNI GTAC 2 cut(s) 75, 98
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 2 cut(s) 36, 49
ScaI AGTACT 1 cut(s) 99
SetI ASST 4 cut(s) 90, 112, 142, 192
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 101, 111
TaqI TCGA 2 cut(s) 90, 178
TasI AATT 1 cut(s) 148
TatI WGTACW 2 cut(s) 74, 97
TauI GCSGC 1 cut(s) 51
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 3
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 101, 111
ZrmI AGTACT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.