Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000637.1

Orthogroup ID

OG0000334

Physical Location & Seq

Genomic Coordinates Forward (+)

26541 .. 26906

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000637.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgtgttataatattttgattgatgggttttttcggaaaggcgaatatgtggaggctaaggaggtttatgagtggttggtgatggactcgaaggcttatcagaatgttgttagttataatgttatgattagtggtttgtgcaaatgcgggaggtttggtgagagtttggagatatggaataggatgaagaggaatgaaagaggatgtgaaatgtttacttgtagttctttgattcatgggttgtgtaaagcggggaatgtggatgaggcggagtgtggaggtgtcgaagacaacatgggaggtggcggcagttgtggaggagagagaggcgctgggtgtcgaaagagaaagcttgggagggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

121

Amino Acids

13.42

Weight (kDa)

7.47

Isoelectric Point (pI)

33.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28240
fragaria_vesca	FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica	MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica	Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis	pycom09g02100 pycom17g08220
rosa_chinensis	RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata	RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora	Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii	Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa	Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha	Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana	Rw2G046080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	9, 117
AciI	CCGC	4 cut(s)	147, 251, 269, 306
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	91, 170
BbsI	GAAGAC	1 cut(s)	294
BccI	CCATC	2 cut(s)	17, 76
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	1 cut(s)	307
BlsI	GCNGC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
BseGI	GGATG	3 cut(s)	189, 209, 268
BseRI	GAGGAG	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	332
BspACI	CCGC	4 cut(s)	147, 251, 269, 306
Bst6I	CTCTTC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	189, 209, 268
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	294
BtsCI	GGATG	3 cut(s)	189, 209, 268
CfoI	GCGC	1 cut(s)	332
CviAII	CATG	2 cut(s)	236, 295
CviJI	RGCY	3 cut(s)	56, 95, 352
CviKI_1	RGCY	3 cut(s)	56, 95, 352
DdeI	CTNAG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	284
FaeI	CATG	2 cut(s)	239, 298
FaiI	YATR	8 cut(s)	9, 48, 69, 117, 125, 175, 237, 296
FatI	CATG	2 cut(s)	235, 294
FauI	CCCGC	2 cut(s)	140, 244
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	3 cut(s)	196, 216, 275
Fsp4HI	GCNGC	1 cut(s)	307
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	333
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	239, 298
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	2 cut(s)	86, 232
HphI	GGTGA	2 cut(s)	91, 170
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	36, 102
Hpy8I	GTNNAC	1 cut(s)	216
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	239, 298
HspAI	GCGC	1 cut(s)	330
LpnPI	CCDG	1 cut(s)	318
MboII	GAAGA	2 cut(s)	199, 299
MlyI	GAGTC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	239, 298
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PsiI	TTATAA	2 cut(s)	9, 117
PspFI	CCCAGC	1 cut(s)	332
SatI	GCNGC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	80
SetI	ASST	5 cut(s)	66, 155, 283, 304, 354
SgeI	CNNG	7 cut(s)	100, 160, 231, 248, 264, 307, 345
SsiI	CCGC	4 cut(s)	147, 251, 269, 306
SspI	AATATT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	89, 285, 340
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	232
TspDTI	ATGAA	3 cut(s)	200, 210, 224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.