FvH4_6g44841

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000334
Physical Location & Seq
Forward (+)
34504295 .. 34508778
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44841.t1

Sequence Viewer

Length: 417 bp
ATGGCGACGGCCGTCCGTCGTCAATCATCGATCGCTCTCTCTCCACCATTGCTCGCGGCAACGAGTCGTCGTCGGCGGCAAGCCACGAGGCGAAGATCCGATCTCCGATCTCTGACCTCGGACCTCCACTTACACGCCGATCTCCGCTACCACGCCAACCTCTTCTACATCCACATTGCTCCTCTCGCTGATGACGTCCTCATCTTCTTTAACCATGACGTCTCTGATCTTGGACTTAAAGCTAGCAATTCAGACGTAGTTTGCAATTCTGTTTATGGTGCAGAGGCTGGTGATACCTGCGGTAGCGTTGTTGACAAGTTCCAGTTGAGTTTCGACTTCTTCCTTTCCATTAATCCTAATATCAACTGCGACAGCTTCTTCGTGGGTCAATGGCTTTGTACTGATGGCACCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

139

Amino Acids

15.28

Weight (kDa)

6.49

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 198, 222
Acc36I ACCTGC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 407
AccII CGCG 1 cut(s) 56
AciI CCGC 5 cut(s) 56, 76, 145, 300, 411
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 9
AcyI GRCGYC 2 cut(s) 195, 219
AfaI GTAC 1 cut(s) 400
AluBI AGCT 2 cut(s) 242, 375
AluI AGCT 2 cut(s) 242, 375
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 9
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 1 cut(s) 121
BanI GGYRCC 1 cut(s) 407
BauI CACGAG 1 cut(s) 85
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 243
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 2 cut(s) 57, 77
BlsI GCNGC 2 cut(s) 58, 78
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 246
BoxI GACNNNNGTC 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 195, 219
BsaJI CCNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 322
Bse3DI GCAATG 2 cut(s) 47, 174
BseCI ATCGAT 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 168
BseMI GCAATG 2 cut(s) 47, 174
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 171
BseX3I CGGCCG 1 cut(s) 9
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 2 cut(s) 12, 33
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 407
BshVI ATCGAT 1 cut(s) 29
BsiEI CGRYCG 2 cut(s) 12, 33
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 6 cut(s) 30, 95, 100, 107, 139, 226
BspACI CCGC 5 cut(s) 56, 76, 145, 300, 411
BspANI GGCC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 29
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 305
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 47, 174
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 6 cut(s) 30, 95, 100, 107, 139, 226
BssNI GRCGYC 2 cut(s) 195, 219
BssSI CACGAG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 2 cut(s) 195, 219
BstC8I GCNNGC 3 cut(s) 54, 81, 244
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 56
BstKTI GATC 6 cut(s) 33, 98, 103, 110, 142, 229
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 6 cut(s) 30, 95, 100, 107, 139, 226
BstMCI CGRYCG 2 cut(s) 12, 33
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 11
BstUI CGCG 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BstZI CGGCCG 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 29
BsuRI GGCC 1 cut(s) 11
BsuTUI ATCGAT 1 cut(s) 29
BtsCI GGATG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 54, 81, 244
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 29
Csp6I GTAC 1 cut(s) 399
CviAII CATG 1 cut(s) 215
CviJI RGCY 6 cut(s) 11, 83, 242, 287, 375, 394
CviKI_1 RGCY 6 cut(s) 11, 83, 242, 287, 375, 394
CviQI GTAC 1 cut(s) 399
DpnI GATC 6 cut(s) 32, 97, 102, 109, 141, 228
DpnII GATC 6 cut(s) 30, 95, 100, 107, 139, 226
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EclXI CGGCCG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 121
Eco52I CGGCCG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 1 cut(s) 218
FaiI YATR 3 cut(s) 216, 276, 415
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 57, 77
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 57, 77
FspBI CTAG 1 cut(s) 243
GluI GCNGC 2 cut(s) 57, 77
HaeIII GGCC 1 cut(s) 11
Hin1I GRCGYC 2 cut(s) 195, 219
Hin1II CATG 1 cut(s) 218
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 6 cut(s) 100, 107, 114, 121, 226, 253
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 4 cut(s) 10, 21, 72, 75
HpyCH4IV ACGT 3 cut(s) 195, 219, 255
HpyCH4V TGCA 2 cut(s) 264, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpySE526I ACGT 3 cut(s) 195, 219, 255
Hsp92I GRCGYC 2 cut(s) 195, 219
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 6 cut(s) 30, 95, 100, 107, 139, 226
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 3 cut(s) 273, 310, 335
MaeI CTAG 1 cut(s) 243
MaeII ACGT 3 cut(s) 195, 219, 255
MalI GATC 6 cut(s) 32, 97, 102, 109, 141, 228
MboI GATC 6 cut(s) 30, 95, 100, 107, 139, 226
MboII GAAGA 5 cut(s) 105, 154, 196, 331, 370
MflI RGATCY 1 cut(s) 95
MluCI AATT 2 cut(s) 247, 265
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 7 cut(s) 81, 127, 134, 170, 192, 209, 277
MseI TTAA 3 cut(s) 210, 237, 351
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 6 cut(s) 30, 95, 100, 107, 139, 226
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PkrI GCNGC 2 cut(s) 58, 78
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 1 cut(s) 72
PpsI GAGTC 1 cut(s) 72
PshAI GACNNNNGTC 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 95
PvuI CGATCG 1 cut(s) 33
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 210, 237, 351
SatI GCNGC 2 cut(s) 57, 77
Sau3AI GATC 6 cut(s) 30, 95, 100, 107, 139, 226
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 73
SetI ASST 9 cut(s) 119, 126, 162, 198, 222, 244, 258, 299, 377
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 247, 265
SsiI CCGC 5 cut(s) 56, 76, 145, 300, 411
SspMI CTAG 1 cut(s) 243
TaiI ACGT 3 cut(s) 198, 222, 258
TaqI TCGA 2 cut(s) 29, 333
TasI AATT 2 cut(s) 247, 265
TatI WGTACW 1 cut(s) 398
TauI GCSGC 2 cut(s) 59, 79
Tru1I TTAA 3 cut(s) 210, 237, 351
Tru9I TTAA 3 cut(s) 210, 237, 351
TspGWI ACGGA 1 cut(s) 5
VpaK11BI GGWCC 1 cut(s) 121
VspI ATTAAT 1 cut(s) 351
XspI CTAG 1 cut(s) 243
ZraI GACGTC 2 cut(s) 196, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.