Rmu_sc0027757.1_g000001

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027757.1
OG0000334
Physical Location & Seq
Forward (+)
1 .. 388
388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027757.1_g000001.1.cds

Sequence Viewer

Length: 238 bp
cgttgcgacggtgcagggcccgtcggaccaggtctccagacggaactccggccttaactcgtttcagctcagccggaggcgatccggcggggacgcgtcgtcggatctcccgccttcgcccggcggagccgggtcgggtttttctggaggaggaggtggaaagtgcgagcagagacgacagcagtccgatgagtctctgcagcgagtcatgtacttgaactgctggggtcagggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

78

Amino Acids

8.12

Weight (kDa)

9.49

Isoelectric Point (pI)

99.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 3 cut(s) 88, 111, 124
AclWI GGATC 2 cut(s) 76, 112
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 120
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 1 cut(s) 218
AhdI GACNNNNNGTC 1 cut(s) 98
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 3 cut(s) 38, 167, 199
AlwI GGATC 2 cut(s) 76, 112
AoxI GGCC 2 cut(s) 17, 50
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 17, 18, 26
AsuC2I CCSGG 2 cut(s) 121, 131
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 30
BcnI CCSGG 2 cut(s) 121, 131
BcoDI GTCTC 3 cut(s) 38, 167, 199
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 1 cut(s) 201
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 3 cut(s) 30, 121, 131
Bme18I GGWCC 1 cut(s) 26
BmeRI GACNNNNNGTC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 17, 18, 26
BmiI GGNNCC 2 cut(s) 19, 128
BmrFI CCNGG 3 cut(s) 30, 121, 131
BoxI GACNNNNGTC 1 cut(s) 182
BpmI CTGGAG 2 cut(s) 20, 166
Bpu1102I GCTNAGC 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 121, 131
BsaI GGTCTC 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 1 cut(s) 120
BseBI CCWGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 2 cut(s) 163, 166
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 19, 52
BsiSI CCGG 5 cut(s) 49, 74, 85, 121, 130
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 3 cut(s) 38, 167, 199
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 19, 52
Bso31I GGTCTC 1 cut(s) 38
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 81, 104
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 3 cut(s) 88, 111, 124
BspANI GGCC 2 cut(s) 19, 52
BspCNI CTCAG 1 cut(s) 82
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 19, 128
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 2 cut(s) 76, 112
BspTNI GGTCTC 1 cut(s) 38
BssMI GATC 2 cut(s) 81, 104
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 96
BstKTI GATC 2 cut(s) 84, 107
BstMAI GTCTC 3 cut(s) 38, 167, 199
BstMBI GATC 2 cut(s) 81, 104
BstNI CCWGG 1 cut(s) 30
BstPAI GACNNNNGTC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 28, 119, 129
BstSFI CTRYAG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 21
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BsuRI GGCC 2 cut(s) 19, 52
Cac8I GCNNGC 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 17, 18, 26
CseI GACGC 2 cut(s) 85, 102
CsiI ACCWGGT 1 cut(s) 28
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 19, 52, 68, 73, 129
CviKI_1 RGCY 5 cut(s) 19, 52, 68, 73, 129
CviQI GTAC 1 cut(s) 212
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 83, 106
DpnII GATC 2 cut(s) 81, 104
DriI GACNNNNNGTC 1 cut(s) 98
Eam1105I GACNNNNNGTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 208
FauI CCCGC 2 cut(s) 81, 118
Fnu4HI GCNGC 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 227
GsuI CTGGAG 2 cut(s) 20, 166
HaeIII GGCC 2 cut(s) 19, 52
HapII CCGG 5 cut(s) 49, 74, 85, 121, 130
HgaI GACGC 2 cut(s) 85, 102
Hin1II CATG 1 cut(s) 212
HinfI GANTC 2 cut(s) 192, 205
HpaII CCGG 5 cut(s) 49, 74, 85, 121, 130
Hpy188I TCNGA 3 cut(s) 26, 104, 188
Hpy188III TCNNGA 2 cut(s) 37, 145
Hpy99I CGWCG 4 cut(s) 11, 26, 101, 104
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 14, 200
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 2 cut(s) 81, 104
LmnI GCTCC 1 cut(s) 126
Lsp1109I GCAGC 1 cut(s) 212
MabI ACCWGGT 1 cut(s) 28
MalI GATC 2 cut(s) 83, 106
MboI GATC 2 cut(s) 81, 104
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 21
MluI ACGCGT 1 cut(s) 94
MlyI GAGTC 2 cut(s) 201, 214
MmeI TCCRAC 2 cut(s) 4, 82
MnlI CCTC 4 cut(s) 70, 141, 144, 147
MseI TTAA 1 cut(s) 55
MspI CCGG 5 cut(s) 49, 74, 85, 121, 130
MspR9I CCNGG 3 cut(s) 30, 121, 131
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 96
NciI CCSGG 2 cut(s) 121, 131
NdeII GATC 2 cut(s) 81, 104
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 2 cut(s) 19, 128
PflFI GACNNNGTC 1 cut(s) 30
PkrI GCNGC 1 cut(s) 202
PleI GAGTC 2 cut(s) 200, 213
PpsI GAGTC 2 cut(s) 200, 213
PshAI GACNNNNGTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 223
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 2 cut(s) 19, 128
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 26
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 30
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 55
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 2 cut(s) 81, 104
Sau96I GGNCC 3 cut(s) 17, 18, 26
SchI GAGTC 2 cut(s) 201, 214
ScrFI CCNGG 3 cut(s) 30, 121, 131
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 34, 70, 158
SexAI ACCWGGT 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 26
SsiI CCGC 3 cut(s) 88, 111, 124
StyD4I CCNGG 3 cut(s) 28, 119, 129
TaaI ACNGT 1 cut(s) 11
TatI WGTACW 1 cut(s) 211
Tru1I TTAA 1 cut(s) 55
Tru9I TTAA 1 cut(s) 55
TseI GCWGC 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.