Rh2CG543700

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000334
Physical Location & Seq
Forward (+)
72189428 .. 72190049
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG543700.1

Sequence Viewer

Length: 267 bp
ATGGCTAAGGCTAGCTTGATTCTAGTTGTTTCTCTTCTTCTCATCATTTCCCTAGCTGAGAGTAAACTAGTCGGAGTTACGTTTAAAGATGACAATTCAGCCATAGTTTGCAATTCCGTTTATGGTGCAGAGGCTGGTGATACCTGCGGTAGCGTCGTTGATAAGTTCGAATTGAGTCTCGATTTCTTCCTTTCCATCAATCCTAATATCAACTGCGACAGCTTCTTCGTGGGTCAATGGCTTTGTACCGACGGGACTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

88

Amino Acids

9.35

Weight (kDa)

4.05

Isoelectric Point (pI)

15.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 152
AciI CCGC 1 cut(s) 147
AfaI GTAC 1 cut(s) 247
AhlI ACTAGT 1 cut(s) 67
AluBI AGCT 3 cut(s) 15, 56, 222
AluI AGCT 3 cut(s) 15, 56, 222
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsuHPI GGTGA 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 168
AsuNHI GCTAGC 1 cut(s) 11
BccI CCATC 1 cut(s) 203
BcgI CGANNNNNNTGC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 182
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 4 cut(s) 12, 23, 53, 68
BfuAI ACCTGC 1 cut(s) 152
BmtI GCTAGC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 168
BseMII CTCAG 1 cut(s) 48
BsgI GTGCAG 2 cut(s) 147, 243
BsmAI GTCTC 1 cut(s) 182
Bsp119I TTCGAA 1 cut(s) 168
BspACI CCGC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 152
BspOI GCTAGC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 6, 57
BstMAI GTCTC 1 cut(s) 182
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 134
CseI GACGC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 246
CviJI RGCY 8 cut(s) 5, 11, 15, 56, 101, 134, 222, 241
CviKI_1 RGCY 8 cut(s) 5, 11, 15, 56, 101, 134, 222, 241
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 2 cut(s) 6, 57
DraI TTTAAA 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
FaiI YATR 2 cut(s) 104, 123
FalI AAGNNNNNCTT 1 cut(s) 31
FspBI CTAG 4 cut(s) 12, 23, 53, 68
HgaI GACGC 1 cut(s) 142
HinfI GANTC 2 cut(s) 19, 175
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 65
Hpy99I CGWCG 2 cut(s) 158, 254
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 111, 128, 260
HpyF3I CTNAG 2 cut(s) 6, 57
HpySE526I ACGT 1 cut(s) 80
LpnPI CCDG 2 cut(s) 120, 157
MaeI CTAG 4 cut(s) 12, 23, 53, 68
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 4 cut(s) 26, 29, 178, 217
MluCI AATT 3 cut(s) 94, 112, 170
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 1 cut(s) 124
MseI TTAA 1 cut(s) 84
NheI GCTAGC 1 cut(s) 11
NspV TTCGAA 1 cut(s) 168
PfeI GAWTC 1 cut(s) 19
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PstNI CAGNNNCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 84
SchI GAGTC 1 cut(s) 184
SetI ASST 5 cut(s) 17, 58, 83, 146, 224
SfuI TTCGAA 1 cut(s) 168
SgeI CNNG 9 cut(s) 24, 28, 35, 65, 80, 147, 156, 191, 241
SpeI ACTAGT 1 cut(s) 67
Sse9I AATT 3 cut(s) 94, 112, 170
SsiI CCGC 1 cut(s) 147
SspMI CTAG 4 cut(s) 12, 23, 53, 68
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 83
TaqI TCGA 2 cut(s) 168, 180
TasI AATT 3 cut(s) 94, 112, 170
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 106
XspI CTAG 4 cut(s) 12, 23, 53, 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.