RLG00000003965

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000334
Physical Location & Seq
Reverse (-)
54798058 .. 54798857
800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003965

Sequence Viewer

Length: 354 bp
ATGACTAGGTCTAGCAACAAAATGGCAACAGTTCTGAACTTGATTCTGGTGCTCTCTCTTCTTCTCATGATTTCGATCTCTGAGAGTAGTACACAGCTTGGAGTTGGAATCGAGGCTATTGATGCCGAATGCAATACTGTTTACGGTGCGGAGGTTGGCGATTCCTGCGATACTGTGACCGAAAAGTTCGGCTTGAGTTTAGAGGAGTTCCTTGCAATCAATCGTAACAGAACGAGTGGGAGTGATCTCGTTGGGAAAGATGAGATTATTATGGCAGAAAATGCTGTAGGAAGCAATGTGATAGATTTAGACAGTGAGGCTTTGAGGAAGGAATGTGACAACAAGACTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

118

Amino Acids

12.57

Weight (kDa)

4.34

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AfaI GTAC 1 cut(s) 91
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BfaI CTAG 2 cut(s) 6, 12
BfmI CTRYAG 1 cut(s) 285
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 74
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 2 cut(s) 75, 244
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 301
BssMI GATC 2 cut(s) 75, 244
Bst4CI ACNGT 5 cut(s) 31, 139, 146, 175, 314
Bst6I CTCTTC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 2 cut(s) 78, 247
BstMBI GATC 2 cut(s) 75, 244
BstMWI GCNNNNNNNGC 3 cut(s) 122, 165, 281
BstSFI CTRYAG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 66
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 67
CviJI RGCY 4 cut(s) 97, 116, 192, 320
CviKI_1 RGCY 4 cut(s) 97, 116, 192, 320
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 81
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 68, 272
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 66
FspBI CTAG 2 cut(s) 6, 12
Hin1II CATG 1 cut(s) 70
HinfI GANTC 4 cut(s) 43, 108, 161, 346
Hpy166II GTNNAC 2 cut(s) 92, 142
Hpy188I TCNGA 2 cut(s) 36, 82
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 92, 142
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 5 cut(s) 31, 139, 146, 175, 314
HpyCH4V TGCA 2 cut(s) 132, 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 122, 165, 281
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 75, 244
LpnPI CCDG 2 cut(s) 32, 178
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 6, 12
MaeIII GTNAC 3 cut(s) 175, 224, 335
MalI GATC 2 cut(s) 77, 246
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 2 cut(s) 50, 53
MhlI GDGCHC 1 cut(s) 54
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 5 cut(s) 106, 145, 196, 310, 318
MseI TTAA 1 cut(s) 352
Mva1269I GAATGC 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 122, 165, 281
NdeII GATC 2 cut(s) 75, 244
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 175, 335
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 3 cut(s) 43, 108, 161
PflFI GACNNNGTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 352
Sau3AI GATC 2 cut(s) 75, 244
SchI GAGTC 1 cut(s) 340
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 11, 99, 156
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SsiI CCGC 1 cut(s) 149
SspMI CTAG 2 cut(s) 6, 12
TaaI ACNGT 5 cut(s) 31, 139, 146, 175, 314
TaqI TCGA 2 cut(s) 74, 111
TaqII GACCGA 1 cut(s) 194
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 3 cut(s) 43, 108, 161
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 175, 335
Tsp45I GTSAC 2 cut(s) 175, 335
TspRI CASTG 1 cut(s) 319
Tth111I GACNNNGTC 1 cut(s) 7
XspI CTAG 2 cut(s) 6, 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.