Prupe.3G230700_v2.0.a1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000334
Physical Location & Seq
Forward (+)
22825795 .. 22826779
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230700.1

Sequence Viewer

Length: 432 bp
ATGTTCCAAGCTCCCTATCACAAACTTGGTTTCTTTTTGTGGGCTTTCCTCTATAAATATATAGAGAAAAGCACAACCCAAAGAAACACAGAGTTTTTACTGCATTATATATACTCAGAGAAACAAGTGCAAATGGCAAAGAATAGCAGCAGAGTGGCAATCATGAACTTGATTTTACTGCTCTCTCTTCTTCTAATGGTTTCCATGGCTGAGAGTAGACAACTTGGCATTGGATTTGGAAAGGAAGAAACTAGCAACCCTAGTAATATCAATTGCGATTCAGTTTATGGTGCAGAGGAGGGTGATACATGTGGTTCTGTTATTGAAAAGTTCAATTTGAGTTCTGATTTCTTCCTCTCTATCAACCCTAATATCAATTGCGACAGCTTCTTTGTGGGCCAATGGCTTTGTACTCAAGGCACTGTGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

144

Amino Acids

16.24

Weight (kDa)

5.29

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 217
AfaI GTAC 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 2 cut(s) 326, 334
AluBI AGCT 2 cut(s) 11, 387
AluI AGCT 2 cut(s) 11, 387
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 374, 406
AspS9I GGNCC 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 314
BbvI GCAGC 1 cut(s) 159
BfaI CTAG 2 cut(s) 252, 261
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 397
BpuEI CTTGAG 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 129, 201
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 399
BsnI GGCC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 204
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 2 cut(s) 128, 202
BspHI TCATGA 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 115, 210
BstDSI CCRYGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 420
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 411
CviAII CATG 3 cut(s) 163, 205, 309
CviJI RGCY 6 cut(s) 11, 44, 209, 387, 399, 406
CviKI_1 RGCY 6 cut(s) 11, 44, 209, 387, 399, 406
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 2 cut(s) 115, 210
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 166, 208, 312
FatI CATG 3 cut(s) 162, 204, 308
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 2 cut(s) 252, 261
GluI GCNGC 1 cut(s) 148
HaeIII GGCC 1 cut(s) 399
Hin1II CATG 3 cut(s) 166, 208, 312
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 2 cut(s) 218, 427
Hpy188I TCNGA 2 cut(s) 118, 346
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 2 cut(s) 218, 427
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4V TGCA 3 cut(s) 103, 130, 293
HpyF3I CTNAG 2 cut(s) 115, 210
Hsp92II CATG 3 cut(s) 166, 208, 312
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 2 cut(s) 252, 261
MboII GAAGA 4 cut(s) 179, 182, 257, 343
MfeI CAATTG 2 cut(s) 271, 376
MluCI AATT 3 cut(s) 271, 334, 376
MnlI CCTC 4 cut(s) 59, 289, 292, 365
MunI CAATTG 2 cut(s) 271, 376
NcoI CCATGG 1 cut(s) 204
NlaIII CATG 3 cut(s) 166, 208, 312
NspI RCATGY 1 cut(s) 312
PagI TCATGA 1 cut(s) 162
PciI ACATGT 1 cut(s) 308
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 1 cut(s) 149
PscI ACATGT 1 cut(s) 308
PspPI GGNCC 1 cut(s) 397
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SatI GCNGC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 397
SetI ASST 2 cut(s) 13, 389
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 271, 334, 376
SspMI CTAG 2 cut(s) 252, 261
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 424
TasI AATT 3 cut(s) 271, 334, 376
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 278
TscAI CASTG 1 cut(s) 427
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 427
XceI RCATGY 1 cut(s) 312
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 2 cut(s) 252, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.