RchiOBHm_Chr5g0071201

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000334
Physical Location & Seq
Forward (+)
77089410 .. 77089667
258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34631

Sequence Viewer

Length: 258 bp
ATGGCAATAGCTCTTAACCTGATTCTGGGGGTATCTCTTATGATTTCCATCTCTGAGGGTAGACATATTGGAGTGGATGGTTTTGATGCAGATTGCAATTCCGTTTACGGTGCAGAGTCTGGTGATTCCTGCAATAGTGTCATTGAAAAGTTTGGAATAAGTAGTTTAGACTTCTTCCTTGGCATCAATCCTAATTGCAACTGCGACGCCTTCTTCGAAGGGCAATGGCTTTGTGTTGATGGCAATCCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

85

Amino Acids

9.04

Weight (kDa)

4.05

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 216
BccI CCATC 3 cut(s) 56, 71, 233
BmsI GCATC 2 cut(s) 76, 192
Bpu14I TTCGAA 1 cut(s) 216
BsaBI GATNNNNATC 2 cut(s) 47, 243
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 230
Bse8I GATNNNNATC 2 cut(s) 47, 243
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 2 cut(s) 47, 243
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 82
CaiI CAGNNNCTG 1 cut(s) 119
CseI GACGC 1 cut(s) 215
CviJI RGCY 2 cut(s) 11, 229
CviKI_1 RGCY 2 cut(s) 11, 229
DdeI CTNAG 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 178
FaiI YATR 2 cut(s) 41, 66
FblI GTMKAC 1 cut(s) 61
FokI GGATG 1 cut(s) 89
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 207
HinfI GANTC 3 cut(s) 22, 116, 125
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 62, 106
Hpy188I TCNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 62, 106
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 212, 220
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 5 cut(s) 89, 96, 113, 132, 198
HpyF3I CTNAG 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 207
LpnPI CCDG 4 cut(s) 11, 32, 105, 142
LweI GCATC 2 cut(s) 76, 192
MboII GAAGA 2 cut(s) 166, 205
MluCI AATT 2 cut(s) 97, 193
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 1 cut(s) 49
MseI TTAA 1 cut(s) 15
NspV TTCGAA 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PfeI GAWTC 2 cut(s) 22, 125
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 119
SaqAI TTAA 1 cut(s) 15
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 13, 21
SfaNI GCATC 2 cut(s) 76, 192
SfuI TTCGAA 1 cut(s) 216
SgeI CNNG 5 cut(s) 31, 38, 132, 141, 191
Sse9I AATT 2 cut(s) 97, 193
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 216
TasI AATT 2 cut(s) 97, 193
TfiI GAWTC 2 cut(s) 22, 125
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspGWI ACGGA 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.