FvH4_6g44545

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000334
Physical Location & Seq
Forward (+)
34314791 .. 34315153
363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44545.t1

Sequence Viewer

Length: 276 bp
ATGGCTCTTGCTATGCCTTGCAACAAAGTGGCCATGCTTCTTGTGCTCTGTCTTGTCCTCATGATCTCCTCCACCGAAAGCAGACAACTCGGAACTGGGTCTGCTGGGAATGGCAAACCGAGCTGTGACGCTGTATATGCTGTACAACCTGCTGATTCCTGCACAAGCGTGATCGAGGCTTTCGCTCTTGATTCTGACTTCTTTTCAATCAATCCTAACATCAACTGCAACGCTATCTTTGTCGATCAATGGCTCTGTGTCGATGGCTCAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

92

Amino Acids

9.54

Weight (kDa)

4.05

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 144
AgsI TTSAA 1 cut(s) 207
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 1 cut(s) 30
BalI TGGCCA 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 48
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfaI CTAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 157
BlpI GCTNAGC 1 cut(s) 268
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 48
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 48
Bsp1407I TGTACA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 63, 171, 244
Bsp1720I GCTNAGC 1 cut(s) 268
BspANI GGCC 1 cut(s) 32
BspHI TCATGA 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 142
BsrI ACTGG 1 cut(s) 100
BssMI GATC 3 cut(s) 63, 171, 244
BstAUI TGTACA 1 cut(s) 142
BstDEI CTNAG 1 cut(s) 268
BstKTI GATC 3 cut(s) 66, 174, 247
BstMBI GATC 3 cut(s) 63, 171, 244
BstMWI GCNNNNNNNGC 3 cut(s) 43, 120, 137
BsuRI GGCC 1 cut(s) 32
BveI ACCTGC 1 cut(s) 157
CciI TCATGA 1 cut(s) 60
CseI GACGC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 143
CviAII CATG 2 cut(s) 34, 61
CviJI RGCY 7 cut(s) 5, 32, 123, 179, 253, 267, 272
CviKI_1 RGCY 7 cut(s) 5, 32, 123, 179, 253, 267, 272
CviQI GTAC 1 cut(s) 143
DdeI CTNAG 1 cut(s) 268
DpnI GATC 3 cut(s) 65, 173, 246
DpnII GATC 3 cut(s) 63, 171, 244
EaeI YGGCCR 1 cut(s) 30
FaeI CATG 2 cut(s) 37, 64
FaiI YATR 5 cut(s) 14, 35, 62, 136, 138
FatI CATG 2 cut(s) 33, 60
FspBI CTAG 1 cut(s) 274
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 37, 64
HinfI GANTC 2 cut(s) 155, 191
Hpy188I TCNGA 2 cut(s) 92, 196
Hpy188III TCNNGA 2 cut(s) 61, 188
HpyCH4V TGCA 3 cut(s) 21, 162, 228
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 120, 137
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 2 cut(s) 37, 64
Kzo9I GATC 3 cut(s) 63, 171, 244
LpnPI CCDG 4 cut(s) 81, 90, 162, 172
MaeI CTAG 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 65, 173, 246
MboI GATC 3 cut(s) 63, 171, 244
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 3 cut(s) 68, 79, 169
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 43, 120, 137
NdeII GATC 3 cut(s) 63, 171, 244
NlaIII CATG 2 cut(s) 37, 64
NmuCI GTSAC 1 cut(s) 125
OliI CACNNNNGTG 1 cut(s) 167
PagI TCATGA 1 cut(s) 60
PfeI GAWTC 2 cut(s) 155, 191
PspFI CCCAGC 1 cut(s) 104
RsaI GTAC 1 cut(s) 144
RsaNI GTAC 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 167
Sau3AI GATC 3 cut(s) 63, 171, 244
SduI GDGCHC 1 cut(s) 48
SetI ASST 2 cut(s) 125, 151
SmiMI CAYNNNNRTG 1 cut(s) 167
SspMI CTAG 1 cut(s) 274
TaqI TCGA 3 cut(s) 174, 243, 261
TatI WGTACW 1 cut(s) 142
TfiI GAWTC 2 cut(s) 155, 191
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.