Rh7CG170200

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000334
Physical Location & Seq
Forward (+)
14295099 .. 14296037
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG170200.1

Sequence Viewer

Length: 291 bp
ATGACTAGGTCTAGCAACAAAATGGCAACAGTTCTGAACTTGATTCTGGTGCTCTCTCTTCTTCTCATGATTTCGATCTCTGAGAGTAGTACACAGCTTGGAGTTGGAGTCCAGGCTATTGATGCCGAATGCAATACTGTTTACGGTGCGGAGGTTGGCGATTCCTGCAATACTGTGACCGAAAAGTTCAGCTTGAGTTTAGAGGAGTTCCTTGCAATCAATGTTAGTTGCAACTTCTTCGAGGGTCAATGGCTTTGTGTTGATGGCAGCCCAAATGAATTAATCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

96

Amino Acids

10.35

Weight (kDa)

4.05

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AfaI GTAC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 97, 192
AluI AGCT 2 cut(s) 97, 192
Alw21I GWGCWC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 267
AseI ATTAAT 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 6, 12
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 74
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 279
BsiHKAI GWGCWC 1 cut(s) 54
BsmI GAATGC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 66
BssMI GATC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 4 cut(s) 31, 139, 146, 175
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 81
BstKTI GATC 1 cut(s) 78
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 2 cut(s) 122, 165
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 279
CciI TCATGA 1 cut(s) 66
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 97, 116, 192, 253, 270
CviKI_1 RGCY 5 cut(s) 97, 116, 192, 253, 270
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 2 cut(s) 6, 12
GluI GCNGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 70
HinfI GANTC 3 cut(s) 43, 108, 161
Hpy166II GTNNAC 2 cut(s) 92, 142
Hpy188I TCNGA 2 cut(s) 36, 82
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 92, 142
HpyCH4III ACNGT 4 cut(s) 31, 139, 146, 175
HpyCH4V TGCA 4 cut(s) 132, 168, 215, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 165
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 4 cut(s) 32, 98, 125, 178
Lsp1109I GCAGC 1 cut(s) 279
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 6, 12
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 50, 53, 229
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 1 cut(s) 278
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 145, 196, 235
MseI TTAA 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 134
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 122, 165
NdeII GATC 1 cut(s) 75
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 175
PagI TCATGA 1 cut(s) 66
PctI GAATGC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 43, 161
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 75
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 11, 99, 156, 194
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 278
SsiI CCGC 1 cut(s) 149
SspMI CTAG 2 cut(s) 6, 12
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 4 cut(s) 31, 139, 146, 175
TaqI TCGA 3 cut(s) 74, 240, 285
TaqII GACCGA 1 cut(s) 194
TasI AATT 1 cut(s) 278
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 2 cut(s) 43, 161
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 291
Tth111I GACNNNGTC 1 cut(s) 7
VspI ATTAAT 1 cut(s) 281
XspI CTAG 2 cut(s) 6, 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.