FvH4_5g02870

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000334
Physical Location & Seq
Reverse (-)
1721896 .. 1722524
629 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02870.t1

Sequence Viewer

Length: 282 bp
ATGACCAAGTCTAGCAACAAAATGGCAACAGTTATGAACTTGATTCTGGTGCTCTCTCTTCTTCTCATGATTACCATCTCTGAGGGTAGTACACAACTTGGAGTTGGAGTCAAGGCCATTGATGCTGACTGCAATGCTGTTTACGGGGTAGAGATTGGCGATTCCTGCGATACTGTGACTGAAAAGTTTGGCTTGAGTTTAGACGAGTTCCTCGCCATCAATGTTAGTTGCAACTTCTTCGAGGGTCAATGGCTTTGTGTTGATGGCAGTCCAAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

94

Amino Acids

9.91

Weight (kDa)

4.05

Isoelectric Point (pI)

33.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 91
Alw21I GWGCWC 1 cut(s) 54
AoxI GGCC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 54
BccI CCATC 3 cut(s) 83, 224, 257
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BfaI CTAG 1 cut(s) 12
BmsI GCATC 1 cut(s) 112
BpuEI CTTGAG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse3DI GCAATG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 74
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 54
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 54
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 31, 175
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 122, 165
BsuRI GGCC 1 cut(s) 116
CciI TCATGA 1 cut(s) 66
Csp6I GTAC 1 cut(s) 90
CviAII CATG 1 cut(s) 67
CviJI RGCY 3 cut(s) 116, 192, 253
CviKI_1 RGCY 3 cut(s) 116, 192, 253
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 35, 68
FalI AAGNNNNNCTT 2 cut(s) 176, 208
FatI CATG 1 cut(s) 66
FspBI CTAG 1 cut(s) 12
HaeIII GGCC 1 cut(s) 116
Hin1II CATG 1 cut(s) 70
HinfI GANTC 3 cut(s) 43, 108, 161
Hpy166II GTNNAC 2 cut(s) 92, 142
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 92, 142
HpyCH4III ACNGT 2 cut(s) 31, 175
HpyCH4V TGCA 2 cut(s) 132, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 165
HpyF3I CTNAG 1 cut(s) 81
Hsp92II CATG 1 cut(s) 70
LpnPI CCDG 2 cut(s) 32, 178
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 175
MboII GAAGA 3 cut(s) 50, 53, 229
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 3 cut(s) 76, 221, 235
MseI TTAA 1 cut(s) 280
MwoI GCNNNNNNNGC 2 cut(s) 122, 165
NlaIII CATG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 175
PagI TCATGA 1 cut(s) 66
PfeI GAWTC 2 cut(s) 43, 161
PflFI GACNNNGTC 1 cut(s) 7
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 280
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 31, 175
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 89
TfiI GAWTC 2 cut(s) 43, 161
Tru1I TTAA 1 cut(s) 280
Tru9I TTAA 1 cut(s) 280
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 50
Tth111I GACNNNGTC 1 cut(s) 7
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.