Prupe.3G230400_v2.0.a1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000334
Physical Location & Seq
Forward (+)
22801982 .. 22802666
685 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230400.1

Sequence Viewer

Length: 288 bp
ATGGCCAAGGCTGGCAGCAAAATGGCACTAATTCTTAACTTGATTCTAGTGCTCTCTCTTGTTCTGATGATTTCCATAGCTGAGAGTAGACAAGTTGGCATTGGATTTGGAGGGAAAAAACCTGCCGCAGTTTGCGCTGCAGTTTATGGTGCAGAGGAGGGTGATACGTGTACTTCTGTTAGCGAGATGTTCAATTTGAGTTTGGATTTCTTCCTTTCTATCAACCCTAATATCAACTGCGACAACTTCTTTGTGGGTCAATGGCTTTGTACTGCAGGGAGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

96

Amino Acids

9.97

Weight (kDa)

4.72

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 88
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 172, 271
AflIII ACRYGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 54
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 15, 137
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 137
AsuHPI GGTGA 1 cut(s) 173
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 2 cut(s) 27, 124
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 138, 273
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 3 cut(s) 16, 126, 138
BlsI GCNGC 3 cut(s) 17, 127, 139
BsaAI YACGTR 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 6
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 2 cut(s) 27, 124
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 54
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 54
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 73
BspMAI CTGCAG 2 cut(s) 142, 277
BspMI ACCTGC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 137
BstMWI GCNNNNNNNGC 2 cut(s) 134, 281
BstSFI CTRYAG 2 cut(s) 138, 273
BstV1I GCAGC 2 cut(s) 27, 124
BsuRI GGCC 1 cut(s) 5
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 137
Csp6I GTAC 2 cut(s) 171, 270
CviJI RGCY 4 cut(s) 5, 11, 80, 265
CviKI_1 RGCY 4 cut(s) 5, 11, 80, 265
CviQI GTAC 2 cut(s) 171, 270
DdeI CTNAG 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaiI YATR 2 cut(s) 77, 147
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 3 cut(s) 16, 126, 138
Fsp4HI GCNGC 3 cut(s) 16, 126, 138
FspBI CTAG 1 cut(s) 47
GlaI GCGC 1 cut(s) 136
GluI GCNGC 3 cut(s) 16, 126, 138
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 137
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 43
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 89, 171
Hpy188I TCNGA 1 cut(s) 66
Hpy8I GTNNAC 2 cut(s) 89, 171
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 3 cut(s) 140, 152, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 281
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 167
HspAI GCGC 1 cut(s) 135
LpnPI CCDG 2 cut(s) 135, 261
Lsp1109I GCAGC 2 cut(s) 27, 124
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 167
MboII GAAGA 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 30, 193
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 104, 148, 151
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 134, 281
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 17, 127, 139
Ppu21I YACGTR 1 cut(s) 168
PstI CTGCAG 2 cut(s) 142, 277
RsaI GTAC 2 cut(s) 172, 271
RsaNI GTAC 2 cut(s) 171, 270
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 16, 126, 138
SduI GDGCHC 1 cut(s) 54
SetI ASST 3 cut(s) 82, 124, 170
SfcI CTRYAG 2 cut(s) 138, 273
SgeI CNNG 9 cut(s) 19, 24, 52, 59, 71, 104, 134, 180, 196
Sse9I AATT 2 cut(s) 30, 193
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 1 cut(s) 170
TasI AATT 2 cut(s) 30, 193
TatI WGTACW 2 cut(s) 170, 269
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseI GCWGC 2 cut(s) 15, 137
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.