Prupe.3G230900_v2.0.a1

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000334
Physical Location & Seq
Forward (+)
22832348 .. 22832754
407 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G230900.1

Sequence Viewer

Length: 291 bp
ATGGCTGTGATTATGTCTAAAAACAAACTTACCATGTCCCTTAATTTGGTTCTTGTGCTTTGCCTTTTCCTCATCATCTCCTTTGCTGAGGGCAAACAACTAGGCATTGGGTTTCATGTGAAAGCCACTCCAAGATGCCAAAAAGTTTATGGGGTAGAAGCTGGTGATACTTGCAATGGGATCACGCAGAAGTTCAAACTGAATGCTGAGTTCTTTGCAATCAATCCTAACATCAATTGCAACAGCATCTTTGTGGGTCAATGGCTTTGTATTGTTGGGACAGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

97

Amino Acids

10.5

Weight (kDa)

9.14

Isoelectric Point (pI)

14.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AlwI GGATC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 176
BbvCI CCTCAGC 1 cut(s) 87
BfaI CTAG 1 cut(s) 101
BmsI GCATC 2 cut(s) 125, 255
Bpu10I CCTNAGC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 78, 198
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 79, 199
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 181
BssMI GATC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 87, 207
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
CviAII CATG 2 cut(s) 34, 116
CviJI RGCY 4 cut(s) 5, 125, 161, 265
CviKI_1 RGCY 4 cut(s) 5, 125, 161, 265
DdeI CTNAG 2 cut(s) 87, 207
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
FaeI CATG 2 cut(s) 37, 119
FaiI YATR 4 cut(s) 14, 35, 117, 150
FaqI GGGAC 1 cut(s) 22
FatI CATG 2 cut(s) 33, 115
FspBI CTAG 1 cut(s) 101
Hin1II CATG 2 cut(s) 37, 119
HphI GGTGA 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 174, 218, 240
HpyF3I CTNAG 2 cut(s) 87, 207
Hsp92II CATG 2 cut(s) 37, 119
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 1 cut(s) 147
LweI GCATC 2 cut(s) 125, 255
MaeI CTAG 1 cut(s) 101
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MfeI CAATTG 1 cut(s) 235
MluCI AATT 2 cut(s) 43, 235
MnlI CCTC 2 cut(s) 80, 82
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 251
MunI CAATTG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 208
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 37, 119
PctI GAATGC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 180
SetI ASST 1 cut(s) 163
SfaNI GCATC 2 cut(s) 125, 255
SgeI CNNG 8 cut(s) 46, 65, 113, 128, 144, 174, 183, 196
SmiMI CAYNNNNRTG 1 cut(s) 251
Sse9I AATT 2 cut(s) 43, 235
SspMI CTAG 1 cut(s) 101
TasI AATT 2 cut(s) 43, 235
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 104
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.