RchiOBHm_Chr7g0234891

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000334
Physical Location & Seq
Reverse (-)
59594114 .. 59594479
366 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21050

Sequence Viewer

Length: 366 bp
ATGTTCCTCAATGTGGCTCTTGTGCTCTGTCTTTTCCTCATCATCTCCTCCGTTGAGAGCAGAAAACTCATCAGCGGTAAGCAATTATCTATAGATAAGGCTAAAGTTTTATCTTATTATCGATCGCTGATCGATAATCAAAATCTGGTTGTGCTGATCGAGCTAGCTTGTTTTAATTTTTATGGTGTAGGTGGGAATGGCAAGCCAGAGTGTGACTCTGTTTATGGGATAAAACCTACAAATCAGTGCAGTGGTATCATGCAGGCGTTCGGTCTGAGCGCTGATGAGTTCTTCGCAATCAACCCTAACCTGAATTGCAATGCTATCTTTGTGGGTCAATGGATTTGTATTAGTGGGTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

121

Amino Acids

13.17

Weight (kDa)

6.11

Isoelectric Point (pI)

22.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 75
AfeI AGCGCT 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 163, 167
AluI AGCT 2 cut(s) 163, 167
Alw21I GWGCWC 1 cut(s) 27
Aor51HI AGCGCT 1 cut(s) 280
AspLEI GCGC 1 cut(s) 281
AsuNHI GCTAGC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 27
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 90
BfoI RGCGCY 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bsa29I ATCGAT 2 cut(s) 121, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 325
BseCI ATCGAT 2 cut(s) 121, 132
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 37
BsgI GTGCAG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 125
BshVI ATCGAT 2 cut(s) 121, 132
BsiEI CGRYCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 122, 129, 156
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 2 cut(s) 121, 132
BspOI GCTAGC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 325
BssMI GATC 3 cut(s) 122, 129, 156
BstC8I GCNNGC 3 cut(s) 165, 203, 264
BstDEI CTNAG 1 cut(s) 275
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 3 cut(s) 125, 132, 159
BstMBI GATC 3 cut(s) 122, 129, 156
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 90
Bsu15I ATCGAT 2 cut(s) 121, 132
BsuTUI ATCGAT 2 cut(s) 121, 132
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 251, 256
Cac8I GCNNGC 3 cut(s) 165, 203, 264
CfoI GCGC 1 cut(s) 281
ClaI ATCGAT 2 cut(s) 121, 132
CviAII CATG 1 cut(s) 259
CviJI RGCY 5 cut(s) 17, 101, 163, 167, 205
CviKI_1 RGCY 5 cut(s) 17, 101, 163, 167, 205
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 124, 131, 158
DpnII GATC 3 cut(s) 122, 129, 156
Eco47III AGCGCT 1 cut(s) 280
FaeI CATG 1 cut(s) 262
FaiI YATR 5 cut(s) 92, 183, 225, 260, 364
FatI CATG 1 cut(s) 258
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 282
HhaI GCGC 1 cut(s) 281
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HinfI GANTC 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 249, 262, 318, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 3 cut(s) 122, 129, 156
LpnPI CCDG 4 cut(s) 131, 219, 248, 323
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 212
MalI GATC 3 cut(s) 124, 131, 158
MboI GATC 3 cut(s) 122, 129, 156
MboII GAAGA 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 3 cut(s) 83, 175, 313
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 3 cut(s) 17, 47, 58
MseI TTAA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 3 cut(s) 122, 129, 156
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 212
Ple19I CGATCG 1 cut(s) 125
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 3 cut(s) 122, 129, 156
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 165, 169, 193, 238, 312
SfcI CTRYAG 1 cut(s) 90
Sse9I AATT 3 cut(s) 83, 175, 313
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 164
TaqI TCGA 3 cut(s) 121, 132, 159
TaqII GACCGA 1 cut(s) 260
TasI AATT 3 cut(s) 83, 175, 313
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 251, 256
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 2 cut(s) 251, 256
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.