RLG00000021291

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000334
Physical Location & Seq
Forward (+)
73839191 .. 73841124
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021291

Sequence Viewer

Length: 420 bp
ATGAACTATCTCAACCGCGTGTGGATGGCCGCCAGCGTTGCGACGGTGCAGGGCCCGTCGGACCATGTCCACAGATGGAACTCCGGCCTTAACTCGTTTCAGCTCAGCCGGAGGCGATCCGGCGGGGACGCGTCGTCGGATCTCCTGCCTTCGCCTGGCGGAGCCGGGTCGGGTTTTTCTGGAGGAGGAGGAGGTGGAAAGCGTGAGGAGAGACGACAGCAGTCCGATGAGTCTCTGCAGCGAGTCATGTACTTGAACTGCTGGGATCCAGGTTTCGCACAAATTTTGGCTGCTATTAGCTGCAGGACACCTTTAGTCAGTGATATACCAACCATAATTTTCGGAGCAAACGTGACTCACCCGGAGAATGGAGAAGATACTAGTCCCTCGATTGCTGCAATACATATTATTACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

140

Amino Acids

14.8

Weight (kDa)

6.39

Isoelectric Point (pI)

76.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 9 - 90 1.8e-16 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 131
AciI CCGC 4 cut(s) 16, 30, 123, 159
AclWI GGATC 4 cut(s) 111, 147, 260, 273
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 282
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 155, 368
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 256
AhdI GACNNNNNGTC 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 2 cut(s) 154, 268
AluBI AGCT 2 cut(s) 103, 300
AluI AGCT 2 cut(s) 103, 300
Alw26I GTCTC 2 cut(s) 205, 237
AlwI GGATC 4 cut(s) 111, 147, 260, 273
AoxI GGCC 3 cut(s) 27, 52, 85
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 4 cut(s) 238, 290, 300, 395
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 3 cut(s) 52, 53, 61
AsuC2I CCSGG 2 cut(s) 166, 362
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 4 cut(s) 250, 277, 287, 382
BccI CCATC 2 cut(s) 19, 69
BciT130I CCWGG 2 cut(s) 156, 270
BcnI CCSGG 2 cut(s) 166, 362
BcoDI GTCTC 2 cut(s) 205, 237
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 236, 301
BisI GCNGC 5 cut(s) 30, 239, 291, 301, 396
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 5 cut(s) 31, 240, 292, 302, 397
Bme1390I CCNGG 4 cut(s) 156, 166, 270, 362
Bme18I GGWCC 1 cut(s) 61
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 52, 53, 61
BmiI GGNNCC 3 cut(s) 54, 163, 267
BmrFI CCNGG 4 cut(s) 156, 166, 270, 362
BoxI GACNNNNGTC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 104
BpuMI CCSGG 2 cut(s) 166, 362
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 368
BseBI CCWGG 2 cut(s) 156, 270
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 2 cut(s) 155, 368
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 4 cut(s) 198, 201, 204, 221
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 4 cut(s) 250, 277, 287, 382
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 18, 131
BshFI GGCC 3 cut(s) 29, 54, 87
BsiSI CCGG 5 cut(s) 84, 109, 120, 165, 362
BslFI GGGAC 2 cut(s) 140, 369
BslI CCNNNNNNNGG 2 cut(s) 155, 368
BsmAI GTCTC 2 cut(s) 205, 237
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 2 cut(s) 140, 369
BsnI GGCC 3 cut(s) 29, 54, 87
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 116, 139, 265
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 4 cut(s) 16, 30, 123, 159
BspANI GGCC 3 cut(s) 29, 54, 87
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 18, 131
BspLI GGNNCC 3 cut(s) 54, 163, 267
BspMAI CTGCAG 2 cut(s) 240, 305
BspPI GGATC 4 cut(s) 111, 147, 260, 273
BssMI GATC 3 cut(s) 116, 139, 265
Bst2UI CCWGG 2 cut(s) 156, 270
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 2 cut(s) 18, 131
BstKTI GATC 3 cut(s) 119, 142, 268
BstMAI GTCTC 2 cut(s) 205, 237
BstMBI GATC 3 cut(s) 116, 139, 265
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 156, 270
BstPAI GACNNNNGTC 1 cut(s) 220
BstSCI CCNGG 4 cut(s) 154, 164, 268, 360
BstSFI CTRYAG 2 cut(s) 236, 301
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 2 cut(s) 18, 131
BstV1I GCAGC 4 cut(s) 250, 277, 287, 382
BstX2I RGATCY 2 cut(s) 139, 265
BstYI RGATCY 2 cut(s) 139, 265
BsuRI GGCC 3 cut(s) 29, 54, 87
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 3 cut(s) 52, 53, 61
CseI GACGC 2 cut(s) 120, 137
Csp6I GTAC 1 cut(s) 250
CviAII CATG 3 cut(s) 65, 247, 417
CviJI RGCY 8 cut(s) 29, 54, 87, 103, 108, 164, 290, 300
CviKI_1 RGCY 8 cut(s) 29, 54, 87, 103, 108, 164, 290, 300
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 1 cut(s) 104
DpnI GATC 3 cut(s) 118, 141, 267
DpnII GATC 3 cut(s) 116, 139, 265
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 61
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 2 cut(s) 154, 268
EcoT38I GRGCYC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 3 cut(s) 68, 250, 420
FaiI YATR 6 cut(s) 66, 248, 326, 335, 405, 418
FaqI GGGAC 2 cut(s) 140, 369
FatI CATG 3 cut(s) 64, 246, 416
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 5 cut(s) 30, 239, 291, 301, 396
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 5 cut(s) 30, 239, 291, 301, 396
FspBI CTAG 1 cut(s) 381
GluI GCNGC 5 cut(s) 30, 239, 291, 301, 396
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 29, 54, 87
HapII CCGG 5 cut(s) 84, 109, 120, 165, 362
HgaI GACGC 2 cut(s) 120, 137
Hin1II CATG 3 cut(s) 68, 250, 420
HinfI GANTC 3 cut(s) 230, 243, 355
HpaII CCGG 5 cut(s) 84, 109, 120, 165, 362
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 4 cut(s) 61, 139, 226, 344
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 4 cut(s) 46, 61, 136, 139
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 4 cut(s) 49, 238, 303, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 3 cut(s) 68, 250, 420
Kzo9I GATC 3 cut(s) 116, 139, 265
LmnI GCTCC 2 cut(s) 161, 344
Lsp1109I GCAGC 4 cut(s) 250, 277, 287, 382
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 118, 141, 267
MboI GATC 3 cut(s) 116, 139, 265
MboII GAAGA 1 cut(s) 386
MflI RGATCY 2 cut(s) 139, 265
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 2 cut(s) 282, 336
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 3 cut(s) 239, 252, 349
MmeI TCCRAC 2 cut(s) 39, 117
MnlI CCTC 7 cut(s) 105, 176, 179, 182, 185, 199, 397
MseI TTAA 1 cut(s) 90
MspI CCGG 5 cut(s) 84, 109, 120, 165, 362
MspR9I CCNGG 4 cut(s) 156, 166, 270, 362
MvaI CCWGG 2 cut(s) 156, 270
MvnI CGCG 2 cut(s) 18, 131
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 2 cut(s) 166, 362
NdeII GATC 3 cut(s) 116, 139, 265
NlaIII CATG 3 cut(s) 68, 250, 420
NlaIV GGNNCC 3 cut(s) 54, 163, 267
NmuCI GTSAC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 348
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 5 cut(s) 31, 240, 292, 302, 397
PleI GAGTC 3 cut(s) 238, 251, 349
PpsI GAGTC 3 cut(s) 238, 251, 349
PshAI GACNNNNGTC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 154, 268
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 2 cut(s) 154, 268
PspN4I GGNNCC 3 cut(s) 54, 163, 267
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 52, 53, 61
PstI CTGCAG 2 cut(s) 240, 305
PsuI RGATCY 2 cut(s) 139, 265
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 5 cut(s) 30, 239, 291, 301, 396
Sau3AI GATC 3 cut(s) 116, 139, 265
Sau96I GGNCC 3 cut(s) 52, 53, 61
SchI GAGTC 3 cut(s) 239, 252, 349
ScrFI CCNGG 4 cut(s) 156, 166, 270, 362
SduI GDGCHC 1 cut(s) 56
SetI ASST 6 cut(s) 105, 196, 274, 302, 313, 354
SfcI CTRYAG 2 cut(s) 236, 301
SinI GGWCC 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 380
Sse9I AATT 2 cut(s) 282, 336
SsiI CCGC 4 cut(s) 16, 30, 123, 159
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 4 cut(s) 154, 164, 268, 360
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 389
TasI AATT 2 cut(s) 282, 336
TatI WGTACW 1 cut(s) 249
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 4 cut(s) 238, 290, 300, 395
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 282
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.