Rh2BG570600

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000334
Physical Location & Seq
Forward (+)
78621003 .. 78633615
12613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG570600.1

Sequence Viewer

Length: 486 bp
ATGAAGCATACCCAAACCCAGCAATCGAGAGAAGGCAGGCACGATGATGACGACGCATCTCTCTCTCAATTCCTTGCCTCCCTAATGGACTACACTCCCACCCGTACAGAGTTTTTGCTAGACAGAGAAATTATCTACAAAGTAATCATGGCTGTGGTTATGTCAAACACCAGTGTGGCTCTTGTTCTCTGTCTTTTCCGGCCCTCATCATCTCCTCCACCGAGAGTAGAAAACTCGGCAGTAAGTCGTACGATTGAAGAGAACTTCAATCATCTAATCACACTGAACGCAGTTGGATTTGCAGGGAAGAAGACTTCGAACCTGATTTGTAATGACATTTATGGTGCAGAGGAAGGTGATACTTGCAGTCTTGTTGCTGAAATGTTCAACCTGAGTCTCGATTTCTTCCTTGCCATCAACCCTAATATCAATTGCGACAGCTTCTTTGTGGGTCAATGGCTTTGCGTTGATGGTGCTCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

4.72

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 118 - 156 5.3e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 106, 250
AgsI TTSAA 3 cut(s) 257, 268, 388
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 1 cut(s) 441
AluI AGCT 1 cut(s) 441
Alw21I GWGCWC 1 cut(s) 478
Alw26I GTCTC 1 cut(s) 401
AoxI GGCC 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 368
AsuII TTCGAA 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 478
BccI CCATC 2 cut(s) 422, 464
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 201
BmsI GCATC 1 cut(s) 65
BpiI GAAGAC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 204
BseYI CCCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 478
BsiSI CCGG 1 cut(s) 199
BsiWI CGTACG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 478
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 392, 477
BstMAI GTCTC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 178, 281
Cac8I GCNNGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 105, 249
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 152, 179, 202, 441, 460
CviKI_1 RGCY 5 cut(s) 152, 179, 202, 441, 460
CviQI GTAC 2 cut(s) 105, 249
DdeI CTNAG 2 cut(s) 392, 477
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
FaeI CATG 1 cut(s) 151
FaiI YATR 4 cut(s) 9, 149, 161, 342
FatI CATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 119
GsaI CCCAGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 202
HapII CCGG 1 cut(s) 199
HgaI GACGC 1 cut(s) 62
Hin1II CATG 1 cut(s) 151
HinfI GANTC 1 cut(s) 394
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 27, 398
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 26, 347
HpyCH4V TGCA 3 cut(s) 302, 347, 366
HpyF3I CTNAG 2 cut(s) 392, 477
Hsp92II CATG 1 cut(s) 151
LpnPI CCDG 7 cut(s) 22, 32, 184, 212, 288, 335, 404
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 119
MboII GAAGA 4 cut(s) 269, 319, 322, 397
MfeI CAATTG 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 3 cut(s) 68, 129, 430
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 4 cut(s) 88, 214, 225, 343
MslI CAYNNNNRTG 3 cut(s) 45, 152, 173
MspI CCGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 430
NlaIII CATG 1 cut(s) 151
NmeAIII GCCGAG 1 cut(s) 215
NspV TTCGAA 1 cut(s) 317
OliI CACNNNNGTG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 48
Pfl23II CGTACG 1 cut(s) 248
PleI GAGTC 1 cut(s) 402
PpsI GAGTC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 18
PspLI CGTACG 1 cut(s) 248
PspPI GGNCC 1 cut(s) 201
RsaI GTAC 2 cut(s) 106, 250
RsaNI GTAC 2 cut(s) 105, 249
RseI CAYNNNNRTG 3 cut(s) 45, 152, 173
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 478
SetI ASST 4 cut(s) 324, 358, 393, 443
SfaNI GCATC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 317
SmiMI CAYNNNNRTG 3 cut(s) 45, 152, 173
Sse9I AATT 3 cut(s) 68, 129, 430
SspMI CTAG 1 cut(s) 119
TaqI TCGA 3 cut(s) 26, 317, 399
TasI AATT 3 cut(s) 68, 129, 430
TscAI CASTG 2 cut(s) 178, 288
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 178, 288
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.