Rroxscaffold_2G00088710

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000334
Physical Location & Seq
Reverse (-)
10657715 .. 10657987
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088710.1

Sequence Viewer

Length: 273 bp
ATGAACTATCTCAACCGCGTGTGGCTGGCCGCCAGCGTTGCGACGGTGCAGGGCCCGTCGGACCAGGTCCCCAGATGGAACTCCGGCCTTAACTCGTTTCAGCTCAGCCGGAGGCGATCCGGCGGGGACGCGTCGTCGGATCTCCTGCCTTCGCCTGGCGGAGCCGGGTCGGGTTTTTCTGGAGGTGGAGGTGGAAAGTGCGAGGAGAGACGACAGCAGTCCGATGAGTCTCTGCAGCGGGTCATGTACTTGAACTGCTGGGGTCAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

90

Amino Acids

9.59

Weight (kDa)

8.84

Isoelectric Point (pI)

87.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 10 - 89 8.6e-18 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 18, 131
AciI CCGC 5 cut(s) 16, 30, 123, 159, 238
AclWI GGATC 2 cut(s) 111, 147
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 155
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 253
AhdI GACNNNNNGTC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 63, 154
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 2 cut(s) 202, 234
AlwI GGATC 2 cut(s) 111, 147
AoxI GGCC 3 cut(s) 27, 52, 85
ApaI GGGCCC 1 cut(s) 56
ApeKI GCWGC 1 cut(s) 235
AspS9I GGNCC 4 cut(s) 52, 53, 61, 67
AsuC2I CCSGG 1 cut(s) 166
AvaII GGWCC 2 cut(s) 61, 67
BaeGI GKGCMC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 65, 156
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 202, 234
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 2 cut(s) 30, 236
BlpI GCTNAGC 1 cut(s) 104
BlsI GCNGC 2 cut(s) 31, 237
Bme1390I CCNGG 3 cut(s) 65, 156, 166
Bme18I GGWCC 2 cut(s) 61, 67
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgT120I GGNCC 4 cut(s) 52, 53, 61, 67
BmiI GGNNCC 3 cut(s) 54, 69, 163
BmrFI CCNGG 3 cut(s) 65, 156, 166
BoxI GACNNNNGTC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 155
BseBI CCWGG 2 cut(s) 65, 156
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 56
BseXI GCAGC 1 cut(s) 247
BseYI CCCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 18, 131
BshFI GGCC 3 cut(s) 29, 54, 87
BsiSI CCGG 4 cut(s) 84, 109, 120, 165
BslFI GGGAC 2 cut(s) 53, 140
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 202, 234
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 53, 140
BsnI GGCC 3 cut(s) 29, 54, 87
Bsp120I GGGCCC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 116, 139
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 5 cut(s) 16, 30, 123, 159, 238
BspANI GGCC 3 cut(s) 29, 54, 87
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 18, 131
BspLI GGNNCC 3 cut(s) 54, 69, 163
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 2 cut(s) 111, 147
BssMI GATC 2 cut(s) 116, 139
Bst2UI CCWGG 2 cut(s) 65, 156
Bst4CI ACNGT 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 27, 34
BstDEI CTNAG 1 cut(s) 104
BstFNI CGCG 2 cut(s) 18, 131
BstKTI GATC 2 cut(s) 119, 142
BstMAI GTCTC 2 cut(s) 202, 234
BstMBI GATC 2 cut(s) 116, 139
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNI CCWGG 2 cut(s) 65, 156
BstPAI GACNNNNGTC 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 63, 154, 164
BstSFI CTRYAG 1 cut(s) 233
BstSLI GKGCMC 1 cut(s) 56
BstUI CGCG 2 cut(s) 18, 131
BstV1I GCAGC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 3 cut(s) 29, 54, 87
Cac8I GCNNGC 2 cut(s) 27, 34
Cfr13I GGNCC 4 cut(s) 52, 53, 61, 67
CseI GACGC 2 cut(s) 120, 137
CsiI ACCWGGT 1 cut(s) 63
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 244
CviJI RGCY 7 cut(s) 25, 29, 54, 87, 103, 108, 164
CviKI_1 RGCY 7 cut(s) 25, 29, 54, 87, 103, 108, 164
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 118, 141
DpnII GATC 2 cut(s) 116, 139
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 27
Eam1105I GACNNNNNGTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 61, 67
EcoO109I RGGNCCY 2 cut(s) 52, 67
EcoRII CCWGG 2 cut(s) 63, 154
EcoT38I GRGCYC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 1 cut(s) 247
FaiI YATR 1 cut(s) 245
FaqI GGGAC 2 cut(s) 53, 140
FatI CATG 1 cut(s) 243
FauI CCCGC 2 cut(s) 116, 231
Fnu4HI GCNGC 2 cut(s) 30, 236
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 2 cut(s) 30, 236
GluI GCNGC 2 cut(s) 30, 236
GsaI CCCAGC 1 cut(s) 262
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 29, 54, 87
HapII CCGG 4 cut(s) 84, 109, 120, 165
HgaI GACGC 2 cut(s) 120, 137
Hin1II CATG 1 cut(s) 247
HinfI GANTC 1 cut(s) 227
HpaII CCGG 4 cut(s) 84, 109, 120, 165
Hpy188I TCNGA 3 cut(s) 61, 139, 223
Hpy188III TCNNGA 1 cut(s) 180
Hpy99I CGWCG 4 cut(s) 46, 61, 136, 139
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 49, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 116, 139
LmnI GCTCC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 247
MabI ACCWGGT 1 cut(s) 63
MalI GATC 2 cut(s) 118, 141
MboI GATC 2 cut(s) 116, 139
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 1 cut(s) 56
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 39, 117
MnlI CCTC 4 cut(s) 105, 176, 182, 196
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 4 cut(s) 84, 109, 120, 165
MspR9I CCNGG 3 cut(s) 65, 156, 166
MvaI CCWGG 2 cut(s) 65, 156
MvnI CGCG 2 cut(s) 18, 131
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 116, 139
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 54, 69, 163
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 31, 237
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 63, 154
PspFI CCCAGC 1 cut(s) 258
PspGI CCWGG 2 cut(s) 63, 154
PspN4I GGNNCC 3 cut(s) 54, 69, 163
PspOMI GGGCCC 1 cut(s) 52
PspPI GGNCC 4 cut(s) 52, 53, 61, 67
PspPPI RGGWCCY 1 cut(s) 67
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 2 cut(s) 30, 236
Sau3AI GATC 2 cut(s) 116, 139
Sau96I GGNCC 4 cut(s) 52, 53, 61, 67
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 65, 156, 166
SduI GDGCHC 1 cut(s) 56
SetI ASST 4 cut(s) 69, 105, 187, 193
SexAI ACCWGGT 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 233
SinI GGWCC 2 cut(s) 61, 67
SsiI CCGC 5 cut(s) 16, 30, 123, 159, 238
StyD4I CCNGG 3 cut(s) 63, 154, 164
TaaI ACNGT 1 cut(s) 46
TatI WGTACW 1 cut(s) 246
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 61, 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.