Rh5BG485500

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000334
Physical Location & Seq
Reverse (-)
77586360 .. 77586828
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG485500.1

Sequence Viewer

Length: 279 bp
ATGGCCAAGTCCAGCAACAAAATGGCAATAGCTCTTAACCTGATTCTGGGGGTATCTCTTATGATTTCCATCTCTGAGGGTAGACATATTGGAGTGGATGGTTTTGACGCAGATTGCAATTCCGTTTACGGTGCAGAGTTTGGTGATTCCTGCAATAGTGTCATTGAAAAGTTTGGAATAAGTAGTTTAGACTTCTTCCTTGGCATCAATCCTAATTGCAACTGCGACGCCTTCTTTGAAGGGCAATGGCTTTGTGTTGATGGCAATCCAAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

92

Amino Acids

9.85

Weight (kDa)

4.18

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 167, 239
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AoxI GGCC 1 cut(s) 3
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AsuHPI GGTGA 1 cut(s) 155
BalI TGGCCA 1 cut(s) 5
BccI CCATC 3 cut(s) 77, 92, 254
BmsI GCATC 1 cut(s) 213
BsaBI GATNNNNATC 2 cut(s) 68, 264
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 251
Bse8I GATNNNNATC 2 cut(s) 68, 264
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 2 cut(s) 68, 264
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 251
BseMII CTCAG 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 46
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 103
CseI GACGC 2 cut(s) 116, 236
CviJI RGCY 3 cut(s) 5, 32, 250
CviKI_1 RGCY 3 cut(s) 5, 32, 250
DdeI CTNAG 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaiI YATR 2 cut(s) 62, 87
FblI GTMKAC 1 cut(s) 82
FokI GGATG 1 cut(s) 110
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 2 cut(s) 116, 236
Hin1I GRCGYC 1 cut(s) 228
HinfI GANTC 2 cut(s) 43, 146
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 2 cut(s) 83, 127
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 2 cut(s) 83, 127
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 2 cut(s) 233, 241
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 117, 134, 153, 219
HpyF3I CTNAG 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 228
LpnPI CCDG 4 cut(s) 25, 32, 53, 163
LweI GCATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 118, 214
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 70
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 36
Msp20I TGGCCA 1 cut(s) 5
PfeI GAWTC 2 cut(s) 43, 146
SaqAI TTAA 1 cut(s) 36
SetI ASST 2 cut(s) 34, 42
SfaNI GCATC 1 cut(s) 213
SgeI CNNG 6 cut(s) 19, 24, 52, 59, 162, 212
Sse9I AATT 2 cut(s) 118, 214
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 131
TasI AATT 2 cut(s) 118, 214
TfiI GAWTC 2 cut(s) 43, 146
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspGWI ACGGA 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.