FvH4_5g34304

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000334
Physical Location & Seq
Forward (+)
24988217 .. 24988544
328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34304.t1

Sequence Viewer

Length: 267 bp
ATGGCAATGACTCTAAACTTGATTCTGGTGATCTCTCTGATGATTTCGATATCCGAGTGTAAACAACTTGGAGCTGGAGTTGGAGTGGATGGTTTCGACGCAGATTGCAATAGCGTCTACGGTGCAGAGTTCGGTGATTCCTGCGAGAGTGTTGTTGAAAAGTTCGGATTACGTAGTTTAGACTTCTTCCTTTCCATCAACCCTAATAGCAACTGCGACCCCTTTGAGGGTCAATGGCTTTGTGTTGATGGCAATCCAAACGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

89

Amino Acids

9.46

Weight (kDa)

4.05

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AfiI CCNNNNNNNGG 2 cut(s) 226, 227
AgsI TTSAA 1 cut(s) 158
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 40, 146
BccI CCATC 3 cut(s) 83, 203, 242
BpmI CTGGAG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 173
BsaBI GATNNNNATC 1 cut(s) 252
BsaXI ACNNNNNCTCC 4 cut(s) 63, 69, 93, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 227
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 252
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 226, 227
BseMI GCAATG 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 144
BslI CCNNNNNNNGG 2 cut(s) 226, 227
Bsp143I GATC 1 cut(s) 30
BsrDI GCAATG 1 cut(s) 12
BssMI GATC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 173
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 173
BtsCI GGATG 1 cut(s) 94
CseI GACGC 2 cut(s) 103, 107
CviJI RGCY 2 cut(s) 74, 238
CviKI_1 RGCY 2 cut(s) 74, 238
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eco105I TACGTA 1 cut(s) 173
Eco32I GATATC 1 cut(s) 51
EcoRV GATATC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 117
FokI GGATG 1 cut(s) 101
GsuI CTGGAG 1 cut(s) 96
HgaI GACGC 2 cut(s) 103, 107
HinfI GANTC 3 cut(s) 10, 22, 137
HphI GGTGA 2 cut(s) 40, 146
Hpy166II GTNNAC 2 cut(s) 62, 118
Hpy188I TCNGA 3 cut(s) 39, 55, 167
Hpy8I GTNNAC 2 cut(s) 62, 118
Hpy99I CGWCG 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 2 cut(s) 108, 125
HpySE526I ACGT 1 cut(s) 172
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 11, 60, 154
MaeII ACGT 1 cut(s) 172
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 1 cut(s) 178
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 1 cut(s) 220
NdeII GATC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 22, 137
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Ppu21I YACGTR 1 cut(s) 173
Sau3AI GATC 1 cut(s) 30
SchI GAGTC 1 cut(s) 4
SetI ASST 2 cut(s) 76, 175
SgeI CNNG 7 cut(s) 31, 38, 67, 80, 87, 153, 157
SnaBI TACGTA 1 cut(s) 173
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 175
TaqI TCGA 2 cut(s) 47, 96
TfiI GAWTC 2 cut(s) 22, 137
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.