pycom09g02100

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000334
Physical Location & Seq
Reverse (-)
1577820 .. 1578074
255 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02100.1

Sequence Viewer

Length: 255 bp
ATGGTGCCTAGCGTGGCGGTGGTGCAAGCCCCTGCTGACCAGGGACATAAGTGGAAATCCGACCTAAAGTCCTTTCAGCTAAACCGGAGGCGCTCATCTTTCTCTGGCGGCAAAGCATCATCGGACCTCCGACCGTTATCCAGCGCAGTTGGGTCGGGTTTCTCTGGAATGTTGGTAAATTGCGAGGAAAGATGGAACCAAACTGACGAGTCCATCCAAAAAGTCATGTACTTGAACTGTTGGGGGCAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

85

Amino Acids

9.24

Weight (kDa)

9.18

Isoelectric Point (pI)

65.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 4 - 83 1.4e-17 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 17, 108
AfaI GTAC 1 cut(s) 230
AgsI TTSAA 1 cut(s) 235
AhdI GACNNNNNGTC 1 cut(s) 67
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
AspLEI GCGC 2 cut(s) 93, 146
AspS9I GGNCC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 124
BanI GGYRCC 1 cut(s) 4
BccI CCATC 2 cut(s) 186, 221
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciT130I CCWGG 1 cut(s) 41
BfaI CTAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 94
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 41
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 6, 197
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 84
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 85
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
BspACI CCGC 2 cut(s) 17, 108
BspLI GGNNCC 2 cut(s) 6, 197
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 2 cut(s) 135, 239
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 146
BstMCI CGRYCG 1 cut(s) 134
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 2 cut(s) 93, 146
Cfr13I GGNCC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 229
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 29, 79, 252
CviKI_1 RGCY 3 cut(s) 29, 79, 252
CviQI GTAC 1 cut(s) 229
DriI GACNNNNNGTC 1 cut(s) 67
Eam1105I GACNNNNNGTC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 48, 227
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 9
GlaI GCGC 2 cut(s) 92, 145
GluI GCNGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 94
HapII CCGG 1 cut(s) 85
HhaI GCGC 2 cut(s) 93, 146
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 91, 144
HinP1I GCGC 2 cut(s) 91, 144
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 85
Hpy188I TCNGA 3 cut(s) 61, 124, 131
Hpy188III TCNNGA 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 135, 239
HpyCH4V TGCA 1 cut(s) 25
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 91, 144
LpnPI CCDG 8 cut(s) 26, 45, 53, 90, 98, 150, 154, 233
LweI GCATC 1 cut(s) 125
MaeI CTAG 1 cut(s) 9
MluCI AATT 1 cut(s) 178
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 2 cut(s) 84, 154
MnlI CCTC 3 cut(s) 81, 137, 178
MspI CCGG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 41
MvaI CCWGG 1 cut(s) 41
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 6, 197
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 6, 197
PspPI GGNCC 1 cut(s) 124
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SatI GCNGC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 41
SetI ASST 3 cut(s) 66, 81, 129
SfaNI GCATC 1 cut(s) 125
SinI GGWCC 1 cut(s) 124
Sse9I AATT 1 cut(s) 178
SsiI CCGC 2 cut(s) 17, 108
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 135, 239
TasI AATT 1 cut(s) 178
TatI WGTACW 1 cut(s) 228
TauI GCSGC 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 124
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.