Rh2DG162500

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000334
Physical Location & Seq
Reverse (-)
14080124 .. 14080468
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG162500.1

Sequence Viewer

Length: 345 bp
ATGGCGGCAAGTGTTGCGACGGTGCAGGGCCCGTCGGACCAGGTCCCCAGATGGAACTCCGACCTCTCTCTCTTCCTTCCCGGCCGAGTTGACTCACCGACTTACCGCACCCCTTTAATGCTCTTACAGTCTCTCTTCCCAAATAACACCAATCGCGTGTGGATGGCGGCGAGTGTTGCGACGGTACAGGGCCCGTCGGACCAGGTCCCCAGATGGAACTCCGGCCTTAACTCGTTTCAGCTCAGCCGAAGGCGATCAGGCGGGGACGCCTTGTCTGATCTCCTGCCCTTGTTTGGCGGAGCCGGGTCTGGTTTTTCCGGCGGAGGAGGGAAGTGGAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

114

Amino Acids

12.12

Weight (kDa)

10.76

Isoelectric Point (pI)

61.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 156
AciI CCGC 6 cut(s) 5, 106, 167, 261, 297, 321
AcoI YGGCCR 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 293
AhdI GACNNNNNGTC 1 cut(s) 271
AjnI CCWGG 2 cut(s) 39, 201
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 135
AoxI GGCC 4 cut(s) 28, 82, 190, 223
ApaI GGGCCC 2 cut(s) 32, 194
AspS9I GGNCC 8 cut(s) 28, 29, 37, 43, 190, 191, 199, 205
AsuC2I CCSGG 2 cut(s) 81, 304
AsuHPI GGTGA 1 cut(s) 87
AvaII GGWCC 4 cut(s) 37, 43, 199, 205
BaeGI GKGCMC 2 cut(s) 32, 194
BanII GRGCYC 2 cut(s) 32, 194
BccI CCATC 3 cut(s) 45, 157, 207
BciT130I CCWGG 2 cut(s) 41, 203
BcnI CCSGG 2 cut(s) 81, 304
BcoDI GTCTC 1 cut(s) 135
BisI GCNGC 2 cut(s) 6, 168
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 2 cut(s) 7, 169
Bme1390I CCNGG 4 cut(s) 41, 81, 203, 304
Bme18I GGWCC 4 cut(s) 37, 43, 199, 205
BmeRI GACNNNNNGTC 1 cut(s) 271
BmgT120I GGNCC 8 cut(s) 28, 29, 37, 43, 190, 191, 199, 205
BmiI GGNNCC 5 cut(s) 30, 45, 192, 207, 301
BmrFI CCNGG 4 cut(s) 41, 81, 203, 304
Bpu1102I GCTNAGC 1 cut(s) 242
BpuMI CCSGG 2 cut(s) 81, 304
BsaHI GRCGYC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 2 cut(s) 41, 203
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 339
BseSI GKGCMC 2 cut(s) 32, 194
BseX3I CGGCCG 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 4 cut(s) 30, 84, 192, 225
BsiEI CGRYCG 1 cut(s) 85
BsiSI CCGG 4 cut(s) 81, 222, 303, 318
BslFI GGGAC 3 cut(s) 29, 191, 278
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 3 cut(s) 29, 191, 278
BsnI GGCC 4 cut(s) 30, 84, 192, 225
Bsp120I GGGCCC 2 cut(s) 28, 190
Bsp1286I GDGCHC 2 cut(s) 32, 194
Bsp143I GATC 2 cut(s) 254, 277
Bsp1720I GCTNAGC 1 cut(s) 242
BspACI CCGC 6 cut(s) 5, 106, 167, 261, 297, 321
BspANI GGCC 4 cut(s) 30, 84, 192, 225
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 5 cut(s) 30, 45, 192, 207, 301
BssMI GATC 2 cut(s) 254, 277
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 41, 203
Bst4CI ACNGT 3 cut(s) 22, 129, 184
Bst6I CTCTTC 2 cut(s) 77, 140
BstACI GRCGYC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 257, 280
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 2 cut(s) 254, 277
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 14, 176
BstNI CCWGG 2 cut(s) 41, 203
BstSCI CCNGG 4 cut(s) 39, 79, 201, 302
BstSLI GKGCMC 2 cut(s) 32, 194
BstUI CGCG 1 cut(s) 156
BstZI CGGCCG 1 cut(s) 82
BsuRI GGCC 4 cut(s) 30, 84, 192, 225
BtsCI GGATG 1 cut(s) 168
Cfr13I GGNCC 8 cut(s) 28, 29, 37, 43, 190, 191, 199, 205
CseI GACGC 1 cut(s) 275
CsiI ACCWGGT 2 cut(s) 39, 201
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 7 cut(s) 30, 84, 192, 225, 241, 246, 302
CviKI_1 RGCY 7 cut(s) 30, 84, 192, 225, 241, 246, 302
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 242
DpnI GATC 2 cut(s) 256, 279
DpnII GATC 2 cut(s) 254, 277
DriI GACNNNNNGTC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 82
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 77, 140
Eam1105I GACNNNNNGTC 1 cut(s) 271
EarI CTCTTC 2 cut(s) 77, 140
EciI GGCGGA 2 cut(s) 312, 336
EclXI CGGCCG 1 cut(s) 82
Eco24I GRGCYC 2 cut(s) 32, 194
Eco47I GGWCC 4 cut(s) 37, 43, 199, 205
Eco52I CGGCCG 1 cut(s) 82
EcoO109I RGGNCCY 4 cut(s) 28, 43, 190, 205
EcoRII CCWGG 2 cut(s) 39, 201
EcoT38I GRGCYC 2 cut(s) 32, 194
FaqI GGGAC 3 cut(s) 29, 191, 278
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 2 cut(s) 6, 168
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 2 cut(s) 32, 194
Fsp4HI GCNGC 2 cut(s) 6, 168
GluI GCNGC 2 cut(s) 6, 168
HaeIII GGCC 4 cut(s) 30, 84, 192, 225
HapII CCGG 4 cut(s) 81, 222, 303, 318
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 92
HpaII CCGG 4 cut(s) 81, 222, 303, 318
HphI GGTGA 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 37, 61, 199, 277
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 4 cut(s) 22, 37, 184, 199
HpyAV CCTTC 2 cut(s) 86, 243
HpyCH4III ACNGT 3 cut(s) 22, 129, 184
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 176
HpyF3I CTNAG 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 267
Kzo9I GATC 2 cut(s) 254, 277
LmnI GCTCC 1 cut(s) 299
MabI ACCWGGT 2 cut(s) 39, 201
MalI GATC 2 cut(s) 256, 279
MboI GATC 2 cut(s) 254, 277
MboII GAAGA 2 cut(s) 64, 127
MhlI GDGCHC 2 cut(s) 32, 194
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 3 cut(s) 15, 84, 177
MnlI CCTC 3 cut(s) 74, 317, 320
MseI TTAA 2 cut(s) 116, 228
MspI CCGG 4 cut(s) 81, 222, 303, 318
MspR9I CCNGG 4 cut(s) 41, 81, 203, 304
MvaI CCWGG 2 cut(s) 41, 203
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 14, 176
NciI CCSGG 2 cut(s) 81, 304
NdeII GATC 2 cut(s) 254, 277
NlaIV GGNNCC 5 cut(s) 30, 45, 192, 207, 301
NmeAIII GCCGAG 1 cut(s) 110
PflFI GACNNNGTC 2 cut(s) 41, 203
PkrI GCNGC 2 cut(s) 7, 169
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PpuMI RGGWCCY 2 cut(s) 43, 205
Psp5II RGGWCCY 2 cut(s) 43, 205
Psp6I CCWGG 2 cut(s) 39, 201
PspGI CCWGG 2 cut(s) 39, 201
PspN4I GGNNCC 5 cut(s) 30, 45, 192, 207, 301
PspOMI GGGCCC 2 cut(s) 28, 190
PspPI GGNCC 8 cut(s) 28, 29, 37, 43, 190, 191, 199, 205
PspPPI RGGWCCY 2 cut(s) 43, 205
PsyI GACNNNGTC 2 cut(s) 41, 203
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 116, 228
SatI GCNGC 2 cut(s) 6, 168
Sau3AI GATC 2 cut(s) 254, 277
Sau96I GGNCC 8 cut(s) 28, 29, 37, 43, 190, 191, 199, 205
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 4 cut(s) 41, 81, 203, 304
SduI GDGCHC 2 cut(s) 32, 194
SetI ASST 4 cut(s) 45, 66, 207, 243
SexAI ACCWGGT 2 cut(s) 39, 201
SinI GGWCC 4 cut(s) 37, 43, 199, 205
SsiI CCGC 6 cut(s) 5, 106, 167, 261, 297, 321
StyD4I CCNGG 4 cut(s) 39, 79, 201, 302
TaaI ACNGT 3 cut(s) 22, 129, 184
TauI GCSGC 2 cut(s) 8, 170
Tru1I TTAA 2 cut(s) 116, 228
Tru9I TTAA 2 cut(s) 116, 228
Tth111I GACNNNGTC 2 cut(s) 41, 203
VpaK11BI GGWCC 4 cut(s) 37, 43, 199, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.