RH2AG557500

LysM domain

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0000334
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG557500.1

Sequence Viewer

Length: 264 bp
ATGGCTAAGCTTAACTTGATTGTGCTTCTAGTTGTCTCTCTTCTTGTCATCATTTCAGTAGCTGAGAGTAAACGACTACCTGGGAAGAAGGCTTCAAACCTGATTTGTAATGACATTTATGGTGCAGAGGAAGGTGATACTTGCAGTCTTGTTGCTGAAATGTTCAACCTGAGTCTCGATTTCTTCCTTGCCATCAACCCTAATATCAATTGCGACAGCTTCTTTGTGGGTCAATGGCTTTGCGTTGATGGTGCTCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

87

Amino Acids

9.47

Weight (kDa)

4.56

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 44 - 82 1.5e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 96, 166
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 3 cut(s) 10, 62, 219
AluI AGCT 3 cut(s) 10, 62, 219
Alw21I GWGCWC 1 cut(s) 256
Alw26I GTCTC 2 cut(s) 40, 179
AlwNI CAGNNNCTG 1 cut(s) 62
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AsuHPI GGTGA 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 256
BccI CCATC 2 cut(s) 200, 242
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 2 cut(s) 40, 179
BfaI CTAG 1 cut(s) 29
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 81
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 54, 161
BsgI GTGCAG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 40, 179
Bsp1286I GDGCHC 1 cut(s) 256
Bsp1720I GCTNAGC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 55, 162
BssECI CCNNGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 6, 63, 170, 255
BstMAI GTCTC 2 cut(s) 40, 179
BstNI CCWGG 1 cut(s) 81
BstSCI CCNGG 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 62
CviJI RGCY 6 cut(s) 5, 10, 62, 92, 219, 238
CviKI_1 RGCY 6 cut(s) 5, 10, 62, 92, 219, 238
DdeI CTNAG 4 cut(s) 6, 63, 170, 255
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 79
FaiI YATR 1 cut(s) 120
FalI AAGNNNNNCTT 1 cut(s) 31
FspBI CTAG 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 82, 125
HpyCH4V TGCA 2 cut(s) 125, 144
HpyF3I CTNAG 4 cut(s) 6, 63, 170, 255
LpnPI CCDG 4 cut(s) 66, 93, 113, 182
MaeI CTAG 1 cut(s) 29
MboII GAAGA 3 cut(s) 32, 97, 175
MfeI CAATTG 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 1 cut(s) 208
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 1 cut(s) 121
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 81
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 62
SaqAI TTAA 1 cut(s) 12
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 256
SetI ASST 7 cut(s) 12, 64, 82, 102, 136, 171, 221
Sse9I AATT 1 cut(s) 208
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 79
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 208
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.