AT4G28240

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000334
Physical Location & Seq
Reverse (-)
13997292 .. 13998604
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28240.1

Sequence Viewer

Length: 261 bp
ATGAGTTATCTGAACAAAGTGTGGATGGCAGCATCGTTCGTAGCTGTTCAAGGAAACGCCGATCACGGCGTCAAGTTAAAAAGCGGTCTCACCTCTGCTCACCGTCTCCAACGAAGACTTTCCTCCGATCTCCGTCCTCTCGCCGCCGCAGATCTAACCGGCGACTCTCTCCCTTCGGAAGAAAGACGTCGTACCTCTTCTTCCACTCCCGATGAGTCTCTCCGACAAGTCATGTACCTCAACTGCTGGGCTCAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

86

Amino Acids

9.49

Weight (kDa)

9.51

Isoelectric Point (pI)

68.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 9 - 85 9.5e-16 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 190
AciI CCGC 3 cut(s) 84, 144, 147
AcyI GRCGYC 2 cut(s) 69, 187
AfaI GTAC 2 cut(s) 193, 236
AgsI TTSAA 1 cut(s) 50
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 92, 110, 222
ApeKI GCWGC 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 82, 92
BanII GRGCYC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 92, 110, 222
BglII AGATCT 1 cut(s) 151
BisI GCNGC 3 cut(s) 30, 144, 147
BlsI GCNGC 3 cut(s) 31, 145, 148
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 121
BpuEI CTTGAG 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 69, 187
BsaI GGTCTC 1 cut(s) 92
Bse118I RCCGGY 1 cut(s) 158
BseGI GGATG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 41
BseYI CCCAGC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 92, 110, 222
BsmBI CGTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 61, 127, 151
BspACI CCGC 3 cut(s) 84, 144, 147
BspTNI GGTCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 158
BssAI RCCGGY 1 cut(s) 158
BssMI GATC 3 cut(s) 61, 127, 151
BssNI GRCGYC 2 cut(s) 69, 187
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 2 cut(s) 69, 187
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 3 cut(s) 64, 130, 154
BstMAI GTCTC 3 cut(s) 92, 110, 222
BstMBI GATC 3 cut(s) 61, 127, 151
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BtsCI GGATG 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 158
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 192, 235
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 44, 251, 258
CviKI_1 RGCY 3 cut(s) 44, 251, 258
CviQI GTAC 2 cut(s) 192, 235
DpnI GATC 3 cut(s) 63, 129, 153
DpnII GATC 3 cut(s) 61, 127, 151
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 110
FaeI CATG 1 cut(s) 235
FaiI YATR 1 cut(s) 233
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 30, 144, 147
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 3 cut(s) 30, 144, 147
GluI GCNGC 3 cut(s) 30, 144, 147
GsaI CCCAGC 1 cut(s) 250
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 2 cut(s) 69, 187
Hin1II CATG 1 cut(s) 235
HinfI GANTC 2 cut(s) 164, 215
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 82, 92
Hpy188I TCNGA 4 cut(s) 12, 127, 178, 224
Hpy188III TCNNGA 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 187
Hsp92I GRCGYC 2 cut(s) 69, 187
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 3 cut(s) 61, 127, 151
LpnPI CCDG 2 cut(s) 172, 232
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 41
MaeII ACGT 1 cut(s) 187
MalI GATC 3 cut(s) 63, 129, 153
MboI GATC 3 cut(s) 61, 127, 151
MboII GAAGA 4 cut(s) 126, 189, 191, 192
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 2 cut(s) 158, 224
MmeI TCCRAC 2 cut(s) 133, 247
MnlI CCTC 5 cut(s) 103, 133, 147, 205, 248
MroXI GAANNNNTTC 1 cut(s) 118
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 159
NdeII GATC 3 cut(s) 61, 127, 151
NlaIII CATG 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 118
PkrI GCNGC 3 cut(s) 31, 145, 148
PleI GAGTC 2 cut(s) 158, 223
PpsI GAGTC 2 cut(s) 158, 223
PspFI CCCAGC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 2 cut(s) 193, 236
RsaNI GTAC 2 cut(s) 192, 235
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 3 cut(s) 30, 144, 147
Sau3AI GATC 3 cut(s) 61, 127, 151
SchI GAGTC 2 cut(s) 158, 224
SduI GDGCHC 1 cut(s) 253
SetI ASST 5 cut(s) 46, 95, 190, 197, 240
SfaNI GCATC 1 cut(s) 41
SgeI CNNG 8 cut(s) 62, 77, 85, 152, 171, 221, 239, 244
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SsiI CCGC 3 cut(s) 84, 144, 147
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 190
TauI GCSGC 2 cut(s) 146, 149
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseI GCWGC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 118
ZraI GACGTC 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.