pycom17g08220

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000334
Physical Location & Seq
Reverse (-)
6135791 .. 6136069
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g08220.1

Sequence Viewer

Length: 279 bp
ATGAATCAACTGAGTCGAGTGTGGATGGCGGCGAGCGTGGCGGTGGTGCAAGGCCCTGTCGACCATGGACATAAGTGGAAATCCGGCCTAAAATCCTTTCAGCTAAACCGGGGGCGATCGTCTTTCGCTGGCGGCGACGCATCATCGGATCTCCGACCGTTATCCGGTGCAGTTGGGTCGGATTTCTCCGGAGTGTTGGGGAATTGCGAGGAGAGACGGAACCACGCGGACGAGTCTATCCAAAAAGTCATGTACTTGAACTGTTGGGGTCAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3774

Protein Analysis

93

Amino Acids

9.94

Weight (kDa)

8.77

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3774 PF12609 9 - 91 3.4e-17 Wound-induced protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AccII CGCG 1 cut(s) 227
AccIII TCCGGA 1 cut(s) 188
AciI CCGC 4 cut(s) 29, 41, 132, 227
AclWI GGATC 1 cut(s) 156
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 164
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 156
Aor13HI TCCGGA 1 cut(s) 188
AoxI GGCC 2 cut(s) 52, 85
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 110
BccI CCATC 1 cut(s) 19
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 2 cut(s) 30, 133
BlsI GCNGC 2 cut(s) 31, 134
Bme1390I CCNGG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 64, 109
BsaWI WCCGGW 2 cut(s) 164, 188
Bsc4I CCNNNNNNNGG 1 cut(s) 164
BseAI TCCGGA 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 64, 109
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 2 cut(s) 119, 158
BshFI GGCC 2 cut(s) 54, 87
BsiEI CGRYCG 2 cut(s) 119, 158
BsiSI CCGG 4 cut(s) 84, 109, 165, 189
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 208
BsmBI CGTCTC 1 cut(s) 208
BsnI GGCC 2 cut(s) 54, 87
Bsp13I TCCGGA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 116, 148
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 4 cut(s) 29, 41, 132, 227
BspANI GGCC 2 cut(s) 54, 87
BspEI TCCGGA 1 cut(s) 188
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 64, 109
BssMI GATC 2 cut(s) 116, 148
BssT1I CCWWGG 1 cut(s) 64
Bst4CI ACNGT 2 cut(s) 159, 263
BstC8I GCNNGC 2 cut(s) 34, 130
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 2 cut(s) 119, 151
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 2 cut(s) 116, 148
BstMCI CGRYCG 2 cut(s) 119, 158
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 2 cut(s) 54, 87
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 34, 130
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 65, 250
CviJI RGCY 4 cut(s) 54, 87, 103, 276
CviKI_1 RGCY 4 cut(s) 54, 87, 103, 276
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 1 cut(s) 11
DpnI GATC 2 cut(s) 118, 150
DpnII GATC 2 cut(s) 116, 148
Eco130I CCWWGG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 2 cut(s) 68, 253
FaiI YATR 3 cut(s) 66, 72, 251
FatI CATG 2 cut(s) 64, 249
FblI GTMKAC 1 cut(s) 60
Fnu4HI GCNGC 2 cut(s) 30, 133
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 30, 133
GluI GCNGC 2 cut(s) 30, 133
HaeIII GGCC 2 cut(s) 54, 87
HapII CCGG 4 cut(s) 84, 109, 165, 189
HgaI GACGC 1 cut(s) 146
Hin1II CATG 2 cut(s) 68, 253
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 3 cut(s) 4, 13, 233
HpaII CCGG 4 cut(s) 84, 109, 165, 189
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 148, 155, 181
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 61
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 159, 263
HpyCH4V TGCA 2 cut(s) 49, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 68, 253
Kpn2I TCCGGA 1 cut(s) 188
Kzo9I GATC 2 cut(s) 116, 148
LpnPI CCDG 7 cut(s) 69, 97, 114, 122, 178, 202, 257
LweI GCATC 1 cut(s) 149
MalI GATC 2 cut(s) 118, 150
MboI GATC 2 cut(s) 116, 148
MflI RGATCY 1 cut(s) 148
MluCI AATT 1 cut(s) 202
MlyI GAGTC 2 cut(s) 22, 242
MmeI TCCRAC 2 cut(s) 159, 178
MnlI CCTC 1 cut(s) 202
MroI TCCGGA 1 cut(s) 188
MspI CCGG 4 cut(s) 84, 109, 165, 189
MspR9I CCNGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 110
NcoI CCATGG 1 cut(s) 64
NdeII GATC 2 cut(s) 116, 148
NlaIII CATG 2 cut(s) 68, 253
NlaIV GGNNCC 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 2 cut(s) 31, 134
Ple19I CGATCG 1 cut(s) 119
PleI GAGTC 2 cut(s) 21, 241
PpsI GAGTC 2 cut(s) 21, 241
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 148
PvuI CGATCG 1 cut(s) 119
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SalI GTCGAC 1 cut(s) 59
SatI GCNGC 2 cut(s) 30, 133
Sau3AI GATC 2 cut(s) 116, 148
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 22, 242
ScrFI CCNGG 1 cut(s) 110
SetI ASST 1 cut(s) 105
SfaNI GCATC 1 cut(s) 149
Sse9I AATT 1 cut(s) 202
SsiI CCGC 4 cut(s) 29, 41, 132, 227
StyD4I CCNGG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 159, 263
TaqI TCGA 2 cut(s) 16, 60
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 252
TauI GCSGC 2 cut(s) 32, 135
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.