RLG00000032398

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000334
Physical Location & Seq
Forward (+)
14429507 .. 14433627
4121 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032398

Sequence Viewer

Length: 462 bp
ATGATTGGCATGGTCCTATCTAGGTTGCAACGCATGATCGATCTGGTGAAGGGAAGGTTTGGAAAGGAGGGTGACTCTCCACGGCACTACAGGGAGGGAGTGATGTGGACGGCGGTCTGGAGGAGGTGGCTCTGTGGCGCTGATGGTGGTCCATCAGAGGTGGTAGGGATGGGCCAGGCTGGCTTAGCAGTCTCCAATCTGCTTGCATCATTGGTTTCTGCTTGTGATCCAGATGTCTTTGCAAGTGGCATGGTAAAAGCATCAATGCTATATGCGGAGCCAGACCAGATAGCTGTCGGTATTAGCGGCGAGGAGGAGCCTCTAGGGTGGAGTGCAGAGGCGAAGGTCAACAAAGTACTGGCCGGAGCCAGTGGAGGTGTCGGAGACGACATGGGAGGTGGCGGCAGTTGTGAAGGAGAGAGAGGAGCTGGGTGTCGAAAGAGAGAGCTTGGGAGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

15.96

Weight (kDa)

5.47

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 113, 275, 306, 402
AclWI GGATC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 360
AfaI GTAC 1 cut(s) 357
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 293, 428, 448
AluI AGCT 3 cut(s) 293, 428, 448
Alw26I GTCTC 2 cut(s) 196, 378
AlwI GGATC 1 cut(s) 221
AoxI GGCC 2 cut(s) 172, 360
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 3 cut(s) 13, 149, 172
AsuHPI GGTGA 2 cut(s) 58, 83
AvaII GGWCC 2 cut(s) 13, 149
BccI CCATC 3 cut(s) 137, 160, 163
BceAI ACGGC 2 cut(s) 98, 126
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 196, 378
BfaI CTAG 2 cut(s) 21, 323
BfmI CTRYAG 1 cut(s) 88
BfoI RGCGCY 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 307, 403
BlpI GCTNAGC 1 cut(s) 184
BlsI GCNGC 2 cut(s) 308, 404
BmcAI AGTACT 1 cut(s) 357
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 13, 149
BmgT120I GGNCC 3 cut(s) 13, 149, 172
BmiI GGNNCC 3 cut(s) 279, 318, 367
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 215, 269
BoxI GACNNNNGTC 1 cut(s) 113
BplI GAGNNNNNCTC 2 cut(s) 59, 91
BpmI CTGGAG 1 cut(s) 139
Bpu1102I GCTNAGC 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 363, 369
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 174
BseNI ACTGG 2 cut(s) 363, 369
BseRI GAGGAG 4 cut(s) 136, 326, 329, 438
BseYI CCCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 2 cut(s) 174, 362
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 196, 378
BsmBI CGTCTC 1 cut(s) 378
BsnI GGCC 2 cut(s) 174, 362
Bsp143I GATC 3 cut(s) 36, 40, 226
Bsp1720I GCTNAGC 1 cut(s) 184
BspACI CCGC 4 cut(s) 113, 275, 306, 402
BspANI GGCC 2 cut(s) 174, 362
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 279, 318, 367
BspPI GGATC 1 cut(s) 221
BsrI ACTGG 2 cut(s) 363, 369
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 36, 40, 226
Bst2UI CCWGG 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 181, 204
BstDEI CTNAG 1 cut(s) 184
BstDSI CCRYGG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 3 cut(s) 39, 43, 229
BstMAI GTCTC 2 cut(s) 196, 378
BstMBI GATC 3 cut(s) 36, 40, 226
BstMWI GCNNNNNNNGC 2 cut(s) 180, 185
BstNI CCWGG 1 cut(s) 176
BstPAI GACNNNNGTC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 2 cut(s) 174, 362
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 181, 204
CfoI GCGC 1 cut(s) 140
Cfr13I GGNCC 3 cut(s) 13, 149, 172
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 356
CviAII CATG 4 cut(s) 10, 34, 250, 391
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 1 cut(s) 184
DpnI GATC 3 cut(s) 38, 42, 228
DpnII GATC 3 cut(s) 36, 40, 226
EaeI YGGCCR 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 13, 149
EcoRII CCWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 378
FaeI CATG 4 cut(s) 13, 37, 253, 394
FaiI YATR 6 cut(s) 11, 35, 251, 271, 273, 392
FatI CATG 4 cut(s) 9, 33, 249, 390
Fnu4HI GCNGC 2 cut(s) 307, 403
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 307, 403
FspBI CTAG 2 cut(s) 21, 323
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 307, 403
GsaI CCCAGC 1 cut(s) 432
GsuI CTGGAG 1 cut(s) 139
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 2 cut(s) 174, 362
HapII CCGG 1 cut(s) 363
HhaI GCGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 13, 37, 253, 394
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 363
HphI GGTGA 2 cut(s) 58, 83
Hpy166II GTNNAC 2 cut(s) 108, 349
Hpy188I TCNGA 2 cut(s) 157, 383
Hpy188III TCNNGA 2 cut(s) 118, 230
Hpy8I GTNNAC 2 cut(s) 108, 349
HpyAV CCTTC 4 cut(s) 43, 48, 337, 407
HpyCH4V TGCA 4 cut(s) 28, 206, 242, 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 185
HpyF3I CTNAG 1 cut(s) 184
Hsp92II CATG 4 cut(s) 13, 37, 253, 394
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 3 cut(s) 36, 40, 226
LmnI GCTCC 4 cut(s) 277, 316, 365, 425
LweI GCATC 2 cut(s) 215, 269
MaeI CTAG 2 cut(s) 21, 323
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 38, 42, 228
MboI GATC 3 cut(s) 36, 40, 226
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 361
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 180, 185
NdeII GATC 3 cut(s) 36, 40, 226
NlaIII CATG 4 cut(s) 13, 37, 253, 394
NlaIV GGNNCC 3 cut(s) 279, 318, 367
NmuCI GTSAC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 308, 404
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PshAI GACNNNNGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 428
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 279, 318, 367
PspPI GGNCC 3 cut(s) 13, 149, 172
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
SatI GCNGC 2 cut(s) 307, 403
Sau3AI GATC 3 cut(s) 36, 40, 226
Sau96I GGNCC 3 cut(s) 13, 149, 172
ScaI AGTACT 1 cut(s) 357
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 176
SfaNI GCATC 2 cut(s) 215, 269
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 2 cut(s) 13, 149
SsiI CCGC 4 cut(s) 113, 275, 306, 402
SspMI CTAG 2 cut(s) 21, 323
StyD4I CCNGG 1 cut(s) 174
TaqI TCGA 2 cut(s) 39, 436
TatI WGTACW 1 cut(s) 355
TauI GCSGC 2 cut(s) 309, 405
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 13, 149
XspI CTAG 2 cut(s) 21, 323
ZrmI AGTACT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.