RLG00000031379

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000334
Physical Location & Seq
Reverse (-)
4512907 .. 4513554
648 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031379

Sequence Viewer

Length: 327 bp
ATGGCTAAAGCTGATACCAACGCATCCATGGTTATGAACTTGACAGTTCTGATGGTGTCATTTCTCCTTCTAGTCCCTTTGGCTGAAAGCCAATTTTTCGGAAATGGGATCTTGACACCTCCCAGTCCCATAGTTCCGCCGTCTCCCAGCAGCCCTCCCACCCTTGAATGTGATTCAGTGTATGGTGTAAAAAGTGGAGACACATGCTTTGAAGTGGCTAAGACTTTCAAACTCACTACTGCATTGTTTGAAACACTCAACCCCAATCTCAATTGCTCAGCTCTCTTCATAGGTCAATGGCTTTGCCTTGATGGAAAATTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

109

Amino Acids

11.53

Weight (kDa)

4.51

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 61 - 103 3.7e-09 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 137
AclWI GGATC 1 cut(s) 116
AgsI TTSAA 4 cut(s) 167, 212, 229, 251
AluBI AGCT 2 cut(s) 11, 281
AluI AGCT 2 cut(s) 11, 281
Alw26I GTCTC 2 cut(s) 147, 192
AlwI GGATC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 46, 305
BceAI ACGGC 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 147, 192
BfaI CTAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 277
BsaJI CCNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 146
BslFI GGGAC 2 cut(s) 59, 111
BsmAI GTCTC 2 cut(s) 147, 192
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 59, 111
Bsp143I GATC 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 277
Bsp19I CCATGG 1 cut(s) 27
BspACI CCGC 1 cut(s) 137
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 116
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 219, 277
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 2 cut(s) 147, 192
BstMBI GATC 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 183
CviAII CATG 2 cut(s) 28, 204
CviJI RGCY 8 cut(s) 5, 11, 83, 90, 153, 218, 281, 301
CviKI_1 RGCY 8 cut(s) 5, 11, 83, 90, 153, 218, 281, 301
DdeI CTNAG 2 cut(s) 219, 277
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 31, 207
FaiI YATR 6 cut(s) 29, 35, 131, 183, 205, 290
FaqI GGGAC 2 cut(s) 59, 111
FatI CATG 2 cut(s) 27, 203
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 1 cut(s) 71
GluI GCNGC 1 cut(s) 151
GsaI CCCAGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 31, 207
HinfI GANTC 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 51, 101
Hpy188III TCNNGA 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 242
HpyF3I CTNAG 2 cut(s) 219, 277
Hsp92II CATG 2 cut(s) 31, 207
Kzo9I GATC 1 cut(s) 108
LpnPI CCDG 2 cut(s) 136, 160
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 71
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 1 cut(s) 108
MluCI AATT 3 cut(s) 92, 271, 317
MnlI CCTC 2 cut(s) 129, 165
MseI TTAA 2 cut(s) 320, 325
MslI CAYNNNNRTG 1 cut(s) 32
MunI CAATTG 1 cut(s) 271
NcoI CCATGG 1 cut(s) 27
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 31, 207
NspI RCATGY 1 cut(s) 207
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 320, 325
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 108
SetI ASST 4 cut(s) 13, 121, 283, 295
SfaNI GCATC 1 cut(s) 32
SgeI CNNG 9 cut(s) 40, 52, 83, 124, 135, 159, 176, 216, 320
SmiMI CAYNNNNRTG 1 cut(s) 32
Sse9I AATT 3 cut(s) 92, 271, 317
SsiI CCGC 1 cut(s) 137
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 46
TasI AATT 3 cut(s) 92, 271, 317
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 320, 325
Tru9I TTAA 2 cut(s) 320, 325
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 50, 277
TspRI CASTG 1 cut(s) 183
XceI RCATGY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.