Rh2BG571100

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000334
Physical Location & Seq
Reverse (-)
78714417 .. 78714814
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG571100.1

Sequence Viewer

Length: 270 bp
ATGGCTCTTGCTACGTCTAACAACAAAGTGGCCATGCTTCTTGTGTTCTGTCTTTTCCTCATCATCTCCTCCACTGAAAGCAGACAACTCGGCACTGGGAATGGCAAACCGAGCTGCGACTTTACTTATGCAGTAAAACCTGCTGATACTTGCGCTGATGTGATAGAAGATTTCGCTCTGGATTCGGACTTCTTCTTTTCAATCAATCCTAACATCAACTGCGACGCTCTCTTTGTCGATCAATGGCTATGTGTCAGTGGGTCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

89

Amino Acids

9.61

Weight (kDa)

4.05

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 30
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 32
BbvI GCAGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 32
BsnI GGCC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 238
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 32
BtsIMutI CAGTG 3 cut(s) 72, 93, 262
BveI ACCTGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 155
CseI GACGC 1 cut(s) 233
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 5, 32, 114, 247
CviKI_1 RGCY 4 cut(s) 5, 32, 114, 247
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 30
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 129, 250, 268
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 81, 153, 164
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 14
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 179, 184
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 2 cut(s) 68, 79
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 69
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 116
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 238
SetI ASST 3 cut(s) 17, 116, 142
SgeI CNNG 9 cut(s) 20, 46, 53, 101, 108, 123, 152, 162, 191
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 237
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 3 cut(s) 79, 100, 262
TseI GCWGC 1 cut(s) 114
TspRI CASTG 3 cut(s) 79, 100, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.