Rroxscaffold_2G00088630

LysM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000334
Physical Location & Seq
Reverse (-)
10553780 .. 10557778
3999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088630.1

Sequence Viewer

Length: 273 bp
ATGGCTCTTGCTATATCTAACAACAAAGTGGCCATGCTTCTTGTGCTCTGTCTTTTCCTCATCAACTCCTCCACTGAAAGCAGACAACTCGGCAGTAAGGGGAACGGCAAACCGAGCTGCGACACTGTTTATGCAGTACAACCTGATGATTCTTGCACAAGCGTGATTTCGGATTTCGGTCTGGATTCTGACAACTTCTTTTCAATCAATCCCAACATCAACTGCGATGCTATCTTTGTCGATCAATGGCTTTGTGTCGAGGGCTCAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

90

Amino Acids

9.64

Weight (kDa)

4.05

Isoelectric Point (pI)

44.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 44 - 86 6e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28240
fragaria_vesca FvH4_3g03881 FvH4_3g03882 FvH4_3g39481 FvH4_3g39491 FvH4_4g25661 FvH4_5g02870 FvH4_5g34303 FvH4_5g34304 FvH4_6g24132 FvH4_6g44490 FvH4_6g44501 FvH4_6g44545 FvH4_6g44841
malus_domestica MD09G1090300.v1.1 MD09G1096600.v1.1 MD17G1084800.v1.1 MD17G1084900.v1.1
prunus_persica Prupe.1G064500_v2.0.a1 Prupe.3G230300_v2.0.a1 Prupe.3G230400_v2.0.a1 Prupe.3G230500_v2.0.a1 Prupe.3G230600_v2.0.a1 Prupe.3G230700_v2.0.a1 Prupe.3G230900_v2.0.a1 Prupe.4G037900_v2.0.a1
pyrus_communis pycom09g02100 pycom17g08220
rosa_chinensis RchiOBHm_Chr2g0161551 RchiOBHm_Chr2g0161661 RchiOBHm_Chr2g0161721 RchiOBHm_Chr2g0161751 RchiOBHm_Chr5g0006151 RchiOBHm_Chr5g0006161 RchiOBHm_Chr5g0071201 RchiOBHm_Chr7g0234891
rosa_laevigata RLG00000003965 RLG00000021291 RLG00000021295 RLG00000023183 RLG00000031379 RLG00000032398 RLG00000036195
rosa_multiflora Rmu_sc0000039.1_g000008 Rmu_sc0000637.1_g000006 Rmu_sc0007000.1_g000002 Rmu_sc0009339.1_g000009 Rmu_sc0027757.1_g000001 Rmu_sc0042097.1_g000001
rosa_roxburghii Rroxscaffold_1G00009880 Rroxscaffold_1G00069840 Rroxscaffold_1G00069850 Rroxscaffold_2G00088370 Rroxscaffold_2G00088630 Rroxscaffold_2G00088650 Rroxscaffold_2G00088660 Rroxscaffold_2G00088670 Rroxscaffold_2G00088680 Rroxscaffold_2G00088710 Rroxscaffold_3G00226660 Rroxscaffold_3G00226670 Rroxscaffold_3G00258720
rosa_rugosa Rorug02G0490500 Rorug02G0490600 Rorug02G0491600 Rorug02G0491800 Rorug02G0491800 Rorug02G0494100 Rorug05G0410900 Rorug07G0037000 Rorug07G0286000
rosa_samantha Rh2AG157300 Rh2AG556800 Rh2AG557500 Rh2AG557800 Rh2AG560100 Rh2BG163600 Rh2BG391200 Rh2BG570100 Rh2BG570600 Rh2BG571000 Rh2BG571100 Rh2BG571400 Rh2CG540600 Rh2CG541100 Rh2CG541400 Rh2CG541500 Rh2CG543700 Rh2DG162500 Rh2DG580000 Rh2DG580200 Rh2DG580300 Rh5AG047700 Rh5AG047800 Rh5BG046400 Rh5BG485500 Rh5CG055100 Rh5CG055200 Rh5CG510000 Rh5DG046200 Rh5DG496700 Rh7AG440700 Rh7AG468400 Rh7BG164100 Rh7BG413500 Rh7BG413600 Rh7CG170200 Rh7CG462400 Rh7CG462500 Rh7DG331400 Rh7DG430400
rosa_wichuraiana Rw2G046080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 138
AgsI TTSAA 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 161
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BisI GCNGC 1 cut(s) 118
BlpI GCTNAGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 119
BmsI GCATC 1 cut(s) 217
Bpu1102I GCTNAGC 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 48
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 48, 266
Bsp143I GATC 1 cut(s) 241
Bsp1720I GCTNAGC 1 cut(s) 265
BspANI GGCC 1 cut(s) 32
BssMI GATC 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 265
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 43, 114
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 1 cut(s) 32
BtgZI GCGATG 1 cut(s) 240
BtsIMutI CAGTG 2 cut(s) 72, 123
Csp6I GTAC 1 cut(s) 137
CviAII CATG 1 cut(s) 34
CviJI RGCY 5 cut(s) 5, 32, 117, 250, 264
CviKI_1 RGCY 5 cut(s) 5, 32, 117, 250, 264
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 265
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
EaeI YGGCCR 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 266
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 14, 35, 132, 271
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 118
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 149, 185
Hpy188I TCNGA 2 cut(s) 172, 190
Hpy188III TCNNGA 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 134, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 114
HpyF3I CTNAG 1 cut(s) 265
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 2 cut(s) 156, 167
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 217
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 48, 266
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 3 cut(s) 68, 79, 253
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 43, 114
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 69
OliI CACNNNNGTG 1 cut(s) 161
PfeI GAWTC 2 cut(s) 149, 185
PkrI GCNGC 1 cut(s) 119
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 241
SduI GDGCHC 2 cut(s) 48, 266
SetI ASST 2 cut(s) 119, 145
SfaNI GCATC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 240, 258
TaqII GACCGA 1 cut(s) 167
TatI WGTACW 1 cut(s) 136
TfiI GAWTC 2 cut(s) 149, 185
TscAI CASTG 2 cut(s) 79, 130
TseI GCWGC 1 cut(s) 117
TspRI CASTG 2 cut(s) 79, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.